Association
A typed association between two entities, supported by evidence
classDiagram
Entity <|-- Association
Association : aggregator_knowledge_source
Association : category
Association : description
Association : has_attribute
Association : has_evidence
Association : id
Association : iri
Association : knowledge_source
Association : name
Association : negated
Association : object
Association : original_knowledge_source
Association : predicate
Association : primary_knowledge_source
Association : publications
Association : qualifiers
Association : source
Association : subject
Association : timepoint
Association : type
Parent Classes
- Entity
- Association
- ChemicalEntityAssessesNamedThingAssociation
- ContributorAssociation
- GenotypeToGenotypePartAssociation
- GenotypeToGeneAssociation
- GenotypeToVariantAssociation
- GeneToGeneAssociation
- CellLineToDiseaseOrPhenotypicFeatureAssociation [ cell line to entity association mixin entity to disease or phenotypic feature association mixin]
- ChemicalToChemicalAssociation [ chemical to entity association mixin]
- ChemicalToDiseaseOrPhenotypicFeatureAssociation [ chemical to entity association mixin entity to disease or phenotypic feature association mixin]
- GeneToPathwayAssociation [ gene to entity association mixin]
- MolecularActivityToPathwayAssociation
- ChemicalToPathwayAssociation [ chemical to entity association mixin]
- NamedThingAssociatedWithLikelihoodOfNamedThingAssociation
- ChemicalToGeneAssociation [ chemical to entity association mixin]
- ChemicalGeneInteractionAssociation [ chemical to entity association mixin]
- ChemicalAffectsGeneAssociation
- DrugToGeneAssociation [ drug to entity association mixin]
- MaterialSampleDerivationAssociation
- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation [ material sample to entity association mixin entity to disease or phenotypic feature association mixin]
- ExposureEventToOutcomeAssociation [ exposure event to entity association mixin entity to outcome association mixin]
- DiseaseToExposureEventAssociation [ disease to entity association mixin entity to exposure event association mixin]
- InformationContentEntityToNamedThingAssociation
- DiseaseOrPhenotypicFeatureToLocationAssociation [ disease or phenotypic feature to entity association mixin]
- GenotypeToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin genotype to entity association mixin]
- ExposureEventToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin]
- DiseaseToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin disease to entity association mixin]
- CaseToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin case to entity association mixin]
- BehaviorToBehavioralFeatureAssociation [ entity to phenotypic feature association mixin]
- GeneToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin gene to entity association mixin]
- GeneToDiseaseAssociation [ entity to disease association mixin gene to entity association mixin]
- VariantToGeneAssociation [ variant to entity association mixin]
- VariantToPopulationAssociation [ variant to entity association mixin frequency quantifier frequency qualifier mixin]
- PopulationToPopulationAssociation
- VariantToPhenotypicFeatureAssociation [ variant to entity association mixin entity to phenotypic feature association mixin]
- VariantToDiseaseAssociation [ variant to entity association mixin entity to disease association mixin]
- GenotypeToDiseaseAssociation [ genotype to entity association mixin entity to disease association mixin]
- OrganismalEntityAsAModelOfDiseaseAssociation [ model to disease association mixin entity to disease association mixin]
- OrganismToOrganismAssociation
- TaxonToTaxonAssociation
- GeneToExpressionSiteAssociation
- SequenceVariantModulatesTreatmentAssociation
- FunctionalAssociation
- MolecularActivityToChemicalEntityAssociation
- MolecularActivityToMolecularActivityAssociation
- EntityToDiseaseAssociation
- EntityToPhenotypicFeatureAssociation
- SequenceAssociation
- SequenceFeatureRelationship
- GeneRegulatoryRelationship
- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
- AnatomicalEntityToAnatomicalEntityAssociation
- OrganismTaxonToOrganismTaxonAssociation [ organism taxon to entity association]
- OrganismTaxonToEnvironmentAssociation [ organism taxon to entity association]
- Association
Children
- Entity
- Association
- ChemicalEntityAssessesNamedThingAssociation
- ContributorAssociation
- GenotypeToGenotypePartAssociation
- GenotypeToGeneAssociation
- GenotypeToVariantAssociation
- GeneToGeneAssociation
- CellLineToDiseaseOrPhenotypicFeatureAssociation [ cell line to entity association mixin entity to disease or phenotypic feature association mixin]
- ChemicalToChemicalAssociation [ chemical to entity association mixin]
- ChemicalToDiseaseOrPhenotypicFeatureAssociation [ chemical to entity association mixin entity to disease or phenotypic feature association mixin]
- GeneToPathwayAssociation [ gene to entity association mixin]
- MolecularActivityToPathwayAssociation
- ChemicalToPathwayAssociation [ chemical to entity association mixin]
- NamedThingAssociatedWithLikelihoodOfNamedThingAssociation
- ChemicalToGeneAssociation [ chemical to entity association mixin]
- ChemicalGeneInteractionAssociation [ chemical to entity association mixin]
- ChemicalAffectsGeneAssociation
- DrugToGeneAssociation [ drug to entity association mixin]
- MaterialSampleDerivationAssociation
- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation [ material sample to entity association mixin entity to disease or phenotypic feature association mixin]
- ExposureEventToOutcomeAssociation [ exposure event to entity association mixin entity to outcome association mixin]
- DiseaseToExposureEventAssociation [ disease to entity association mixin entity to exposure event association mixin]
- InformationContentEntityToNamedThingAssociation
- DiseaseOrPhenotypicFeatureToLocationAssociation [ disease or phenotypic feature to entity association mixin]
- GenotypeToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin genotype to entity association mixin]
- ExposureEventToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin]
- DiseaseToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin disease to entity association mixin]
- CaseToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin case to entity association mixin]
- BehaviorToBehavioralFeatureAssociation [ entity to phenotypic feature association mixin]
- GeneToPhenotypicFeatureAssociation [ entity to phenotypic feature association mixin gene to entity association mixin]
- GeneToDiseaseAssociation [ entity to disease association mixin gene to entity association mixin]
- VariantToGeneAssociation [ variant to entity association mixin]
- VariantToPopulationAssociation [ variant to entity association mixin frequency quantifier frequency qualifier mixin]
- PopulationToPopulationAssociation
- VariantToPhenotypicFeatureAssociation [ variant to entity association mixin entity to phenotypic feature association mixin]
- VariantToDiseaseAssociation [ variant to entity association mixin entity to disease association mixin]
- GenotypeToDiseaseAssociation [ genotype to entity association mixin entity to disease association mixin]
- OrganismalEntityAsAModelOfDiseaseAssociation [ model to disease association mixin entity to disease association mixin]
- OrganismToOrganismAssociation
- TaxonToTaxonAssociation
- GeneToExpressionSiteAssociation
- SequenceVariantModulatesTreatmentAssociation
- FunctionalAssociation
- MolecularActivityToChemicalEntityAssociation
- MolecularActivityToMolecularActivityAssociation
- EntityToDiseaseAssociation
- EntityToPhenotypicFeatureAssociation
- SequenceAssociation
- SequenceFeatureRelationship
- GeneRegulatoryRelationship
- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
- AnatomicalEntityToAnatomicalEntityAssociation
- OrganismTaxonToOrganismTaxonAssociation [ organism taxon to entity association]
- OrganismTaxonToEnvironmentAssociation [ organism taxon to entity association]
- Association
Slots
| Name | Description |
|---|---|
| aggregator_knowledge_source | An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form. |
| category | Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity, etc. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
| description | a human-readable description of an entity |
| has_attribute | connects any entity to an attribute |
| has_evidence | connects an association to an instance of supporting evidence |
| id | A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
| iri | An IRI for an entity. This is determined by the id using expansion rules. |
| knowledge_source | An Information Resource from which the knowledge expressed in an Association was retrieved, directly or indirectly. This can be any resource through which the knowledge passed on its way to its currently serialized form. In practice, implementers should use one of the more specific subtypes of this generic property. |
| name | A human-readable name for an attribute or entity. |
| negated | if set to true, then the association is negated i.e. is not true |
| object | connects an association to the object of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. |
| original_knowledge_source | None |
| predicate | A high-level grouping for the relationship type. AKA minimal predicate. This is analogous to category for nodes. |
| primary_knowledge_source | The most upstream source of the knowledge expressed in an Association that an implementer can identify (may or may not be the 'original' source). |
| publications | connects an association to publications supporting the association |
| qualifiers | connects an association to qualifiers that modify or qualify the meaning of that association |
| source | None |
| subject | connects an association to the subject of the association. For example, in a gene-to-phenotype association, the gene is subject and phenotype is object. |
| timepoint | a point in time |
| type | rdf:type of biolink:Association should be fixed at rdf:Statement |
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | ['biolink:Association'] |
| native | ['biolink:Association'] |
| exact | ['OBAN:association', 'rdf:Statement', 'owl:Axiom'] |