RNAProduct
None
classDiagram
GeneProductMixin <|-- RNAProduct
Transcript <|-- RNAProduct
RNAProduct : available_from
RNAProduct : category
RNAProduct : description
RNAProduct : has_attribute
RNAProduct : has_biological_sequence
RNAProduct : has_chemical_role
RNAProduct : id
RNAProduct : in_taxon
RNAProduct : iri
RNAProduct : is_metabolite
RNAProduct : is_toxic
RNAProduct : max_tolerated_dose
RNAProduct : name
RNAProduct : provided_by
RNAProduct : source
RNAProduct : synonym
RNAProduct : trade_name
RNAProduct : type
RNAProduct : xref
Parent Classes
- Entity
- NamedThing
- ChemicalEntity [ physical essence chemical or drug or treatment chemical entity or gene or gene product chemical entity or protein or polypeptide]
- MolecularEntity
- NucleicAcidEntity [ genomic entity thing with taxon physical essence ontology class]
- Transcript
- RNAProduct [ gene product mixin]
- RNAProductIsoform [ gene product isoform mixin]
- NoncodingRNAProduct
- RNAProduct [ gene product mixin]
- Transcript
- NucleicAcidEntity [ genomic entity thing with taxon physical essence ontology class]
- MolecularEntity
- ChemicalEntity [ physical essence chemical or drug or treatment chemical entity or gene or gene product chemical entity or protein or polypeptide]
- NamedThing
Children
- Entity
- NamedThing
- ChemicalEntity [ physical essence chemical or drug or treatment chemical entity or gene or gene product chemical entity or protein or polypeptide]
- MolecularEntity
- NucleicAcidEntity [ genomic entity thing with taxon physical essence ontology class]
- Transcript
- RNAProduct [ gene product mixin]
- RNAProductIsoform [ gene product isoform mixin]
- NoncodingRNAProduct
- RNAProduct [ gene product mixin]
- Transcript
- NucleicAcidEntity [ genomic entity thing with taxon physical essence ontology class]
- MolecularEntity
- ChemicalEntity [ physical essence chemical or drug or treatment chemical entity or gene or gene product chemical entity or protein or polypeptide]
- NamedThing
Slots
| Name | Description |
|---|---|
| available_from | |
| category | Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values biolink:Protein, biolink:GeneProduct, biolink:MolecularEntity, etc. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature f may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing} |
| description | a human-readable description of an entity |
| has_attribute | connects any entity to an attribute |
| has_biological_sequence | connects a genomic feature to its sequence |
| has_chemical_role | A role is particular behaviour which a material entity may exhibit. |
| id | A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI |
| in_taxon | connects an entity to its taxonomic classification. Only certain kinds of entities can be taxonomically classified; see 'thing with taxon' |
| iri | An IRI for an entity. This is determined by the id using expansion rules. |
| is_metabolite | indicates whether a molecular entity is a metabolite |
| is_toxic | |
| max_tolerated_dose | The highest dose of a drug or treatment that does not cause unacceptable side effects. The maximum tolerated dose is determined in clinical trials by testing increasing doses on different groups of people until the highest dose with acceptable side effects is found. Also called MTD. |
| name | A human-readable name for an attribute or entity. |
| provided_by | The value in this node property represents the knowledge provider that created or assembled the node and all of its attributes. Used internally to represent how a particular node made its way into a knowledge provider or graph. |
| source | None |
| synonym | Alternate human-readable names for a thing |
| trade_name | |
| type | None |
| xref | Alternate CURIEs for a thing |
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | ['https://w3id.org/biolink/biolink-model/:RNAProduct'] |
| native | ['https://w3id.org/biolink/biolink-model/:RNAProduct'] |
| exact | ['CHEBI:33697', 'WIKIDATA:Q11053'] |