VariantToDiseaseAssociation

None

classDiagram VariantToEntityAssociationMixin <|-- VariantToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- VariantToDiseaseAssociation Association <|-- VariantToDiseaseAssociation VariantToDiseaseAssociation : aggregator_knowledge_source VariantToDiseaseAssociation : category VariantToDiseaseAssociation : description VariantToDiseaseAssociation : frequency_qualifier VariantToDiseaseAssociation : has_attribute VariantToDiseaseAssociation : has_evidence VariantToDiseaseAssociation : id VariantToDiseaseAssociation : iri VariantToDiseaseAssociation : knowledge_source VariantToDiseaseAssociation : name VariantToDiseaseAssociation : negated VariantToDiseaseAssociation : object VariantToDiseaseAssociation : onset_qualifier VariantToDiseaseAssociation : original_knowledge_source VariantToDiseaseAssociation : predicate VariantToDiseaseAssociation : primary_knowledge_source VariantToDiseaseAssociation : publications VariantToDiseaseAssociation : qualifiers VariantToDiseaseAssociation : severity_qualifier VariantToDiseaseAssociation : source VariantToDiseaseAssociation : subject VariantToDiseaseAssociation : timepoint VariantToDiseaseAssociation : type

Parent Classes

Entity
- Association
  - VariantToDiseaseAssociation [ variant to entity association mixin entity to disease association mixin]
    - VariantAsAModelOfDiseaseAssociation [ model to disease association mixin entity to disease association mixin]

Children

Entity
- Association
  - VariantToDiseaseAssociation [ variant to entity association mixin entity to disease association mixin]
    - VariantAsAModelOfDiseaseAssociation [ model to disease association mixin entity to disease association mixin]

Slots

Name	Description
aggregator_knowledge_source	An intermediate aggregator resource from which knowledge expressed in an Association was retrieved downstream of the original source, on its path to its current serialized form.
category	Name of the high level ontology class in which this entity is categorized. Corresponds to the label for the biolink entity type class. In a neo4j database this MAY correspond to the neo4j label tag. In an RDF database it should be a biolink model class URI. This field is multi-valued. It should include values for ancestors of the biolink class; for example, a protein such as Shh would have category values `biolink:Protein`, `biolink:GeneProduct`, `biolink:MolecularEntity`, etc. In an RDF database, nodes will typically have an rdf:type triples. This can be to the most specific biolink class, or potentially to a class more specific than something in biolink. For example, a sequence feature `f` may have a rdf:type assertion to a SO class such as TF_binding_site, which is more specific than anything in biolink. Here we would have categories {biolink:GenomicEntity, biolink:MolecularEntity, biolink:NamedThing}
description	a human-readable description of an entity
frequency_qualifier	a qualifier used in a phenotypic association to state how frequent the phenotype is observed in the subject
has_attribute	connects any entity to an attribute
has_evidence	connects an association to an instance of supporting evidence
id	A unique identifier for an entity. Must be either a CURIE shorthand for a URI or a complete URI
iri	An IRI for an entity. This is determined by the id using expansion rules.
knowledge_source	An Information Resource from which the knowledge expressed in an Association was retrieved, directly or indirectly. This can be any resource through which the knowledge passed on its way to its currently serialized form. In practice, implementers should use one of the more specific subtypes of this generic property.
name	A human-readable name for an attribute or entity.
negated	if set to true, then the association is negated i.e. is not true
object	a disease that is associated with that variant
onset_qualifier	a qualifier used in a phenotypic association to state when the phenotype appears is in the subject
original_knowledge_source	None
predicate	E.g. is pathogenic for
primary_knowledge_source	The most upstream source of the knowledge expressed in an Association that an implementer can identify (may or may not be the 'original' source).
publications	connects an association to publications supporting the association
qualifiers	connects an association to qualifiers that modify or qualify the meaning of that association
severity_qualifier	a qualifier used in a phenotypic association to state how severe the phenotype is in the subject
source	None
subject	a sequence variant in which the allele state is associated in some way with the disease state
timepoint	a point in time
type	None

Mappings

Mapping Type	Mapped Value
self	['biolink:VariantToDiseaseAssociation']
native	['biolink:VariantToDiseaseAssociation']