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Class: BioSample

A hypothetical collection of attributes that represent a sample of water from a specific location and depth with associated bacterial composition.

URI: oregon_water_samples:BioSample

classDiagram class BioSample NamedThing <|-- BioSample BioSample : bacteria BioSample : depth BioSample : id BioSample : latitude BioSample : longitude BioSample : sample_type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
depth 0..1
Float		 The depth of the water sample in centimeters direct
sample_type 0..1
Uriorcurie		 The type of sample direct
latitude 0..1
Float		 The latitude of the water sample direct
longitude 0..1
Float		 The longitude of the water sample direct
bacteria 0..*
Uriorcurie		 The bacteria, represented by a NCBITaxon identifier, present in a sample direct
id 1..1
Uriorcurie		 A unique identifier for a thing NamedThing

Usages

used by used in type used
BioSampleCollection entries range BioSample

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/sierra-moxon/oregon-water-samples

Mappings

Mapping Type Mapped Value
self oregon_water_samples:BioSample
native oregon_water_samples:BioSample

LinkML Source

Direct

name: BioSample
description: A hypothetical collection of attributes that represent a sample of water
  from a specific  location and depth with associated bacterial composition.
from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
is_a: NamedThing
slots:
- depth
- sample_type
- latitude
- longitude
- bacteria
class_uri: oregon_water_samples:BioSample

Induced

name: BioSample
description: A hypothetical collection of attributes that represent a sample of water
  from a specific  location and depth with associated bacterial composition.
from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
is_a: NamedThing
attributes:
  depth:
    name: depth
    description: The depth of the water sample in centimeters
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: oregon_water_samples:depth
    alias: depth
    owner: BioSample
    domain_of:
    - BioSample
    range: float
  sample_type:
    name: sample_type
    description: The type of sample
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: oregon_water_samples:sample_type
    alias: sample_type
    owner: BioSample
    domain_of:
    - BioSample
    range: uriorcurie
  latitude:
    name: latitude
    description: The latitude of the water sample
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: oregon_water_samples:latitude
    alias: latitude
    owner: BioSample
    domain_of:
    - BioSample
    range: float
    pattern: ^[-+]?([1-8]?\d(\.\d+)?|90(\.0+)?)$
  longitude:
    name: longitude
    description: The longitude of the water sample
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: oregon_water_samples:longitude
    alias: longitude
    owner: BioSample
    domain_of:
    - BioSample
    range: float
    pattern: ^[-+]?(180(\.0+)?|((1[0-7]\d)|([1-9]?\d))(\.\d+)?)$
  bacteria:
    name: bacteria
    description: The bacteria, represented by a NCBITaxon identifier, present in a
      sample
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: oregon_water_samples:bacteria
    multivalued: true
    alias: bacteria
    owner: BioSample
    domain_of:
    - BioSample
    range: uriorcurie
    pattern: ^NCBITaxon:\d+$
  id:
    name: id
    description: A unique identifier for a thing
    from_schema: https://w3id.org/sierra-moxon/oregon-water-samples
    rank: 1000
    slot_uri: schema:identifier
    identifier: true
    alias: id
    owner: BioSample
    domain_of:
    - NamedThing
    range: uriorcurie
    required: true
class_uri: oregon_water_samples:BioSample