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Class: AccessibleDnaRegion

A region (or regions) of a chromatinized genome that has been measured to be more accessible to an enzyme such as DNase-I or Tn5 Transpose

URI: biolink:AccessibleDnaRegion

classDiagram class AccessibleDnaRegion GenomicEntity <|-- AccessibleDnaRegion ChemicalEntityOrGeneOrGeneProduct <|-- AccessibleDnaRegion PhysicalEssence <|-- AccessibleDnaRegion OntologyClass <|-- AccessibleDnaRegion RegulatoryRegion <|-- AccessibleDnaRegion AccessibleDnaRegion : category AccessibleDnaRegion : description AccessibleDnaRegion : full_name AccessibleDnaRegion : has_attribute AccessibleDnaRegion --|> attribute : has_attribute AccessibleDnaRegion : has_biological_sequence AccessibleDnaRegion : id AccessibleDnaRegion : in_taxon AccessibleDnaRegion --|> organism taxon : in_taxon AccessibleDnaRegion : in_taxon_label AccessibleDnaRegion : iri AccessibleDnaRegion : name AccessibleDnaRegion : provided_by AccessibleDnaRegion : synonym AccessibleDnaRegion : type AccessibleDnaRegion : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • dnase-seq accessible region
  • atac-seq accessible region

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:AccessibleDnaRegion
native biolink:AccessibleDnaRegion
exact SO:0002231

LinkML Source

Direct

name: accessible dna region
description: A region (or regions) of a chromatinized genome that has been measured
  to be more accessible to an enzyme such as DNase-I or Tn5 Transpose
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- dnase-seq accessible region
- atac-seq accessible region
exact_mappings:
- SO:0002231
is_a: regulatory region
mixins:
- genomic entity
- chemical entity or gene or gene product
- physical essence
- ontology class