Class: AnatomicalEntity

A subcellular location, cell type or gross anatomical part

classDiagram class AnatomicalEntity PhysicalEssence <|-- AnatomicalEntity OrganismalEntity <|-- AnatomicalEntity AnatomicalEntity <|-- CellularComponent AnatomicalEntity <|-- Cell AnatomicalEntity <|-- GrossAnatomicalStructure AnatomicalEntity <|-- PathologicalAnatomicalStructure AnatomicalEntity : category AnatomicalEntity : description AnatomicalEntity : full_name AnatomicalEntity : has_attribute AnatomicalEntity --|> attribute : has_attribute AnatomicalEntity : id AnatomicalEntity : in_taxon AnatomicalEntity --|> organism taxon : in_taxon AnatomicalEntity : in_taxon_label AnatomicalEntity : iri AnatomicalEntity : name AnatomicalEntity : provided_by AnatomicalEntity : synonym AnatomicalEntity : type AnatomicalEntity : xref

Inheritance

Entity
- NamedThing
  - BiologicalEntity [ ThingWithTaxon]
    - OrganismalEntity [ SubjectOfInvestigation]
      - AnatomicalEntity [ PhysicalEssence]
        
        CellularComponent
        
        Cell
        
        GrossAnatomicalStructure
        
        PathologicalAnatomicalStructure [ PathologicalEntityMixin]

Slots

Name	Cardinality and Range	Description	Inheritance
in_taxon	0..* OrganismTaxon	connects an entity to its taxonomic classification	ThingWithTaxon
in_taxon_label	0..1 LabelType	The human readable scientific name for the taxon of the entity	ThingWithTaxon
provided_by	0..* String	The value in this node property represents the knowledge provider that create...	NamedThing
xref	0..* Uriorcurie	A database cross reference or alternative identifier for a NamedThing or edge...	NamedThing
full_name	0..1 LabelType	a long-form human readable name for a thing	NamedThing
synonym	0..* LabelType	Alternate human-readable names for a thing	NamedThing
id	1..1 String	A unique identifier for an entity	Entity
iri	0..1 IriType	An IRI for an entity	Entity
category	1..* CategoryType	Name of the high level ontology class in which this entity is categorized	Entity
type	0..* String		Entity
name	0..1 LabelType	A human-readable name for an attribute or entity	Entity
description	0..1 NarrativeText	a human-readable description of an entity	Entity
has_attribute	0..* Attribute	may often be an organism attribute	Entity

Usages

used by	used in	type	used
GeneExpressionMixin	expression_site	range	AnatomicalEntity
GeneToGeneCoexpressionAssociation	expression_site	range	AnatomicalEntity
ChemicalGeneInteractionAssociation	subject_context_qualifier	range	AnatomicalEntity
ChemicalGeneInteractionAssociation	object_context_qualifier	range	AnatomicalEntity
ChemicalGeneInteractionAssociation	anatomical_context_qualifier	range	AnatomicalEntity
ChemicalAffectsGeneAssociation	subject_context_qualifier	range	AnatomicalEntity
ChemicalAffectsGeneAssociation	object_context_qualifier	range	AnatomicalEntity
ChemicalAffectsGeneAssociation	anatomical_context_qualifier	range	AnatomicalEntity
GeneAffectsChemicalAssociation	subject_context_qualifier	range	AnatomicalEntity
GeneAffectsChemicalAssociation	object_context_qualifier	range	AnatomicalEntity
GeneAffectsChemicalAssociation	anatomical_context_qualifier	range	AnatomicalEntity
DiseaseOrPhenotypicFeatureToLocationAssociation	object	range	AnatomicalEntity
VariantToGeneExpressionAssociation	expression_site	range	AnatomicalEntity
GeneToExpressionSiteAssociation	object	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityAssociation	subject	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityAssociation	object	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityPartOfAssociation	subject	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityPartOfAssociation	object	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityOntogenicAssociation	subject	range	AnatomicalEntity
AnatomicalEntityToAnatomicalEntityOntogenicAssociation	object	range	AnatomicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

UBERON
GO
CL
UMLS
MESH
NCIT
EMAPA
ZFA
FBbt
WBbt

Schema Source

from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type	Mapped Value
self	biolink:AnatomicalEntity
native	biolink:AnatomicalEntity
exact	UBERON:0001062, WIKIDATA:Q4936952, UMLSSG:ANAT, STY:T017, FMA:62955, CARO:0000000, SIO:001262, STY:T029, STY:T030
narrow	ZFA:0100000, FBbt:10000000, EMAPA:0, MA:0000001, XAO:0000000, WBbt:0000100, NCIT:C12219, GO:0110165, STY:T031
related	SNOMEDCT:123037004

LinkML Source

Direct

name: anatomical entity
id_prefixes:
- UBERON
- GO
- CL
- UMLS
- MESH
- NCIT
- EMAPA
- ZFA
- FBbt
- WBbt
description: A subcellular location, cell type or gross anatomical part
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- UBERON:0001062
- WIKIDATA:Q4936952
- UMLSSG:ANAT
- STY:T017
- FMA:62955
- CARO:0000000
- SIO:001262
- STY:T029
- STY:T030
related_mappings:
- SNOMEDCT:123037004
narrow_mappings:
- ZFA:0100000
- FBbt:10000000
- EMAPA:0
- MA:0000001
- XAO:0000000
- WBbt:0000100
- NCIT:C12219
- GO:0110165
- STY:T031
is_a: organismal entity
mixins:
- physical essence