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Class: Article

_a piece of writing on a particular topic presented as a stand-alone section of a larger publication _

URI: biolink:Article

classDiagram class Article Publication <|-- Article Article <|-- JournalArticle Article : authors Article --|> agent : authors Article : category Article : creation_date Article : description Article : format Article : full_name Article : has_attribute Article --|> attribute : has_attribute Article : id Article : iri Article : iso_abbreviation Article : issue Article : keywords Article : license Article : mesh_terms Article : name Article : pages Article : provided_by Article : published_in Article : rights Article : summary Article : synonym Article : type Article : volume Article : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
published_in 1..1
Uriorcurie		 The enclosing parent serial containing the article should have industry-stand... direct
iso_abbreviation 0..1
String		 Optional value, if used locally as a convenience, is set to the iso abbreviat... direct
volume 0..1
String		 volume of a book or music release in a collection/series or a published colle... direct
issue 0..1
String		 issue of a newspaper, a scientific journal or magazine for reference purpose direct
authors 0..*
Agent		 connects an publication to the list of authors who contributed to the publica... Publication
pages 0..*
String		 When a 2-tuple of page numbers are provided, they represent the start and end... Publication
summary 0..1
String		 executive summary of a publication Publication
keywords 0..*
String		 keywords tagging a publication Publication
mesh_terms 0..*
Uriorcurie		 mesh terms tagging a publication Publication
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... Publication, NamedThing
license 0..1
String		 InformationContentEntity
rights 0..1
String		 InformationContentEntity
format 0..1
String		 InformationContentEntity
creation_date 0..1
Date		 date on which an entity was created InformationContentEntity
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 Different kinds of publication subtypes will have different preferred identif... Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 the 'title' of the publication is generally recorded in the 'name' property (... Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • PMID

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Article
native biolink:Article
exact SIO:000154, fabio:article

LinkML Source

Direct

name: article
id_prefixes:
- PMID
description: "a piece of writing on a particular topic presented as a stand-alone\
  \  section of a larger publication\t  "
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- SIO:000154
- fabio:article
is_a: publication
slots:
- published in
- iso abbreviation
- volume
- issue
slot_usage:
  published in:
    name: published in
    description: The enclosing parent serial containing the article should have industry-standard
      identifier from ISSN.
    domain_of:
    - book chapter
    - article
    required: true
  iso abbreviation:
    name: iso abbreviation
    description: Optional value, if used locally as a convenience, is set to the iso
      abbreviation of the 'published in' parent.
    domain_of:
    - serial
    - article