Skip to content

Class: BiologicalEntity

  • NOTE: this is an abstract class and should not be instantiated directly

URI: biolink:BiologicalEntity

classDiagram class BiologicalEntity ThingWithTaxon <|-- BiologicalEntity NamedThing <|-- BiologicalEntity BiologicalEntity <|-- RegulatoryRegion BiologicalEntity <|-- BiologicalProcessOrActivity BiologicalEntity <|-- GeneticInheritance BiologicalEntity <|-- OrganismalEntity BiologicalEntity <|-- DiseaseOrPhenotypicFeature BiologicalEntity <|-- Gene BiologicalEntity <|-- MacromolecularComplex BiologicalEntity <|-- NucleosomeModification BiologicalEntity <|-- Genome BiologicalEntity <|-- Polypeptide BiologicalEntity <|-- ProteinDomain BiologicalEntity <|-- PosttranslationalModification BiologicalEntity <|-- ProteinFamily BiologicalEntity <|-- NucleicAcidSequenceMotif BiologicalEntity <|-- GeneFamily BiologicalEntity <|-- Genotype BiologicalEntity <|-- Haplotype BiologicalEntity <|-- SequenceVariant BiologicalEntity <|-- ReagentTargetedGene BiologicalEntity : category BiologicalEntity : description BiologicalEntity : full_name BiologicalEntity : has_attribute BiologicalEntity --|> attribute : has_attribute BiologicalEntity : id BiologicalEntity : in_taxon BiologicalEntity --|> organism taxon : in_taxon BiologicalEntity : in_taxon_label BiologicalEntity : iri BiologicalEntity : name BiologicalEntity : provided_by BiologicalEntity : synonym BiologicalEntity : type BiologicalEntity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • bioentity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:BiologicalEntity
native biolink:BiologicalEntity
narrow WIKIDATA:Q28845870, STY:T050, SIO:010046, STY:T129

LinkML Source

Direct

name: biological entity
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- bioentity
narrow_mappings:
- WIKIDATA:Q28845870
- STY:T050
- SIO:010046
- STY:T129
is_a: named thing
abstract: true
mixins:
- thing with taxon