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Class: BiologicalProcess

One or more causally connected executions of molecular functions

URI: biolink:BiologicalProcess

classDiagram class BiologicalProcess Occurrent <|-- BiologicalProcess OntologyClass <|-- BiologicalProcess BiologicalProcessOrActivity <|-- BiologicalProcess BiologicalProcess <|-- Pathway BiologicalProcess <|-- PhysiologicalProcess BiologicalProcess <|-- Behavior BiologicalProcess <|-- PathologicalProcess BiologicalProcess : category BiologicalProcess : description BiologicalProcess : enabled_by BiologicalProcess --|> physical entity : enabled_by BiologicalProcess : full_name BiologicalProcess : has_attribute BiologicalProcess --|> attribute : has_attribute BiologicalProcess : has_input BiologicalProcess --|> named thing : has_input BiologicalProcess : has_output BiologicalProcess --|> named thing : has_output BiologicalProcess : id BiologicalProcess : in_taxon BiologicalProcess --|> organism taxon : in_taxon BiologicalProcess : in_taxon_label BiologicalProcess : iri BiologicalProcess : name BiologicalProcess : provided_by BiologicalProcess : synonym BiologicalProcess : type BiologicalProcess : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
has_input 0..*
NamedThing		 holds between a process and a continuant, where the continuant is an input in... BiologicalProcessOrActivity
has_output 0..*
NamedThing		 holds between a process and a continuant, where the continuant is an output o... BiologicalProcessOrActivity
enabled_by 0..*
PhysicalEntity		 holds between a process and a physical entity, where the physical entity exec... BiologicalProcessOrActivity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
MacromolecularMachineToBiologicalProcessAssociation object range BiologicalProcess

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • GO

  • REACT

  • metacyc.reaction

  • KEGG.MODULE

  • KEGG

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:BiologicalProcess
native biolink:BiologicalProcess
exact GO:0008150, SIO:000006, WIKIDATA:Q2996394
broad WIKIDATA:P682

LinkML Source

Direct

name: biological process
id_prefixes:
- GO
- REACT
- metacyc.reaction
- KEGG.MODULE
- KEGG
description: One or more causally connected executions of molecular functions
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- GO:0008150
- SIO:000006
- WIKIDATA:Q2996394
broad_mappings:
- WIKIDATA:P682
is_a: biological process or activity
mixins:
- occurrent
- ontology class