Skip to content

Class: BiologicalProcessOrActivity

Either an individual molecular activity, or a collection of causally connected molecular activities in a biological system.

URI: biolink:BiologicalProcessOrActivity

classDiagram class BiologicalProcessOrActivity Occurrent <|-- BiologicalProcessOrActivity OntologyClass <|-- BiologicalProcessOrActivity BiologicalEntity <|-- BiologicalProcessOrActivity BiologicalProcessOrActivity <|-- MolecularActivity BiologicalProcessOrActivity <|-- BiologicalProcess BiologicalProcessOrActivity : category BiologicalProcessOrActivity : description BiologicalProcessOrActivity : enabled_by BiologicalProcessOrActivity --|> physical entity : enabled_by BiologicalProcessOrActivity : full_name BiologicalProcessOrActivity : has_attribute BiologicalProcessOrActivity --|> attribute : has_attribute BiologicalProcessOrActivity : has_input BiologicalProcessOrActivity --|> named thing : has_input BiologicalProcessOrActivity : has_output BiologicalProcessOrActivity --|> named thing : has_output BiologicalProcessOrActivity : id BiologicalProcessOrActivity : in_taxon BiologicalProcessOrActivity --|> organism taxon : in_taxon BiologicalProcessOrActivity : in_taxon_label BiologicalProcessOrActivity : iri BiologicalProcessOrActivity : name BiologicalProcessOrActivity : provided_by BiologicalProcessOrActivity : synonym BiologicalProcessOrActivity : type BiologicalProcessOrActivity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_input 0..*
NamedThing
holds between a process and a continuant, where the continuant is an input in... direct
has_output 0..*
NamedThing
holds between a process and a continuant, where the continuant is an output o... direct
enabled_by 0..*
PhysicalEntity
holds between a process and a physical entity, where the physical entity exec... direct
id 1..1
String
A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon
connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType
The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String
The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie
A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType
a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType
Alternate human-readable names for a thing NamedThing
iri 0..1
IriType
An IRI for an entity Entity
category 1..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Usages

used by used in type used
BiologicalProcessOrActivity has_input domain BiologicalProcessOrActivity
BiologicalProcessOrActivity has_output domain BiologicalProcessOrActivity
BiologicalProcessOrActivity enabled_by domain BiologicalProcessOrActivity
MolecularActivity has_input domain BiologicalProcessOrActivity
MolecularActivity has_output domain BiologicalProcessOrActivity
MolecularActivity enabled_by domain BiologicalProcessOrActivity
BiologicalProcess has_input domain BiologicalProcessOrActivity
BiologicalProcess has_output domain BiologicalProcessOrActivity
BiologicalProcess enabled_by domain BiologicalProcessOrActivity
Pathway has_input domain BiologicalProcessOrActivity
Pathway has_output domain BiologicalProcessOrActivity
Pathway enabled_by domain BiologicalProcessOrActivity
PhysiologicalProcess has_input domain BiologicalProcessOrActivity
PhysiologicalProcess has_output domain BiologicalProcessOrActivity
PhysiologicalProcess enabled_by domain BiologicalProcessOrActivity
Behavior has_input domain BiologicalProcessOrActivity
Behavior has_output domain BiologicalProcessOrActivity
Behavior enabled_by domain BiologicalProcessOrActivity
PathologicalProcess has_input domain BiologicalProcessOrActivity
PathologicalProcess has_output domain BiologicalProcessOrActivity
PathologicalProcess enabled_by domain BiologicalProcessOrActivity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • GO

  • REACT

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:BiologicalProcessOrActivity
native biolink:BiologicalProcessOrActivity

LinkML Source

Direct

name: biological process or activity
id_prefixes:
- GO
- REACT
description: Either an individual molecular activity, or a collection of causally
  connected molecular activities in a biological system.
from_schema: https://w3id.org/biolink/biolink-model
is_a: biological entity
mixins:
- occurrent
- ontology class
slots:
- has input
- has output
- enabled by