Class: BiologicalProcessOrActivity
Either an individual molecular activity, or a collection of causally connected molecular activities in a biological system.
URI: biolink:BiologicalProcessOrActivity
classDiagram
class BiologicalProcessOrActivity
Occurrent <|-- BiologicalProcessOrActivity
OntologyClass <|-- BiologicalProcessOrActivity
BiologicalEntity <|-- BiologicalProcessOrActivity
BiologicalProcessOrActivity <|-- MolecularActivity
BiologicalProcessOrActivity <|-- BiologicalProcess
BiologicalProcessOrActivity : category
BiologicalProcessOrActivity : description
BiologicalProcessOrActivity : enabled_by
BiologicalProcessOrActivity --|> physical entity : enabled_by
BiologicalProcessOrActivity : full_name
BiologicalProcessOrActivity : has_attribute
BiologicalProcessOrActivity --|> attribute : has_attribute
BiologicalProcessOrActivity : has_input
BiologicalProcessOrActivity --|> named thing : has_input
BiologicalProcessOrActivity : has_output
BiologicalProcessOrActivity --|> named thing : has_output
BiologicalProcessOrActivity : id
BiologicalProcessOrActivity : in_taxon
BiologicalProcessOrActivity --|> organism taxon : in_taxon
BiologicalProcessOrActivity : in_taxon_label
BiologicalProcessOrActivity : iri
BiologicalProcessOrActivity : name
BiologicalProcessOrActivity : provided_by
BiologicalProcessOrActivity : synonym
BiologicalProcessOrActivity : type
BiologicalProcessOrActivity : xref
Inheritance
- Entity
- NamedThing
- BiologicalEntity [ ThingWithTaxon]
- BiologicalProcessOrActivity [ Occurrent OntologyClass]
- BiologicalEntity [ ThingWithTaxon]
- NamedThing
Slots
| Name | Cardinality and Range | Description | Inheritance |
|---|---|---|---|
| has_input | 0..* NamedThing |
holds between a process and a continuant, where the continuant is an input in... | direct |
| has_output | 0..* NamedThing |
holds between a process and a continuant, where the continuant is an output o... | direct |
| enabled_by | 0..* PhysicalEntity |
holds between a process and a physical entity, where the physical entity exec... | direct |
| id | 1..1 String |
A unique identifier for an entity | Entity, OntologyClass |
| in_taxon | 0..* OrganismTaxon |
connects an entity to its taxonomic classification | ThingWithTaxon |
| in_taxon_label | 0..1 LabelType |
The human readable scientific name for the taxon of the entity | ThingWithTaxon |
| provided_by | 0..* String |
The value in this node property represents the knowledge provider that create... | NamedThing |
| xref | 0..* Uriorcurie |
A database cross reference or alternative identifier for a NamedThing or edge... | NamedThing |
| full_name | 0..1 LabelType |
a long-form human readable name for a thing | NamedThing |
| synonym | 0..* LabelType |
Alternate human-readable names for a thing | NamedThing |
| iri | 0..1 IriType |
An IRI for an entity | Entity |
| category | 1..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
| type | 0..* String |
Entity | |
| name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
| description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
| has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Usages
Identifier and Mapping Information
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes:
-
GO
-
REACT
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type | Mapped Value |
|---|---|
| self | biolink:BiologicalProcessOrActivity |
| native | biolink:BiologicalProcessOrActivity |
LinkML Source
Direct
name: biological process or activity
id_prefixes:
- GO
- REACT
description: Either an individual molecular activity, or a collection of causally
connected molecular activities in a biological system.
from_schema: https://w3id.org/biolink/biolink-model
is_a: biological entity
mixins:
- occurrent
- ontology class
slots:
- has input
- has output
- enabled by