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Class: CellLineAsAModelOfDiseaseAssociation

URI: biolink:CellLineAsAModelOfDiseaseAssociation

classDiagram class CellLineAsAModelOfDiseaseAssociation ModelToDiseaseAssociationMixin <|-- CellLineAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- CellLineAsAModelOfDiseaseAssociation CellLineToDiseaseOrPhenotypicFeatureAssociation <|-- CellLineAsAModelOfDiseaseAssociation CellLineAsAModelOfDiseaseAssociation : aggregator_knowledge_source CellLineAsAModelOfDiseaseAssociation : category CellLineAsAModelOfDiseaseAssociation : description CellLineAsAModelOfDiseaseAssociation : frequency_qualifier CellLineAsAModelOfDiseaseAssociation : has_attribute CellLineAsAModelOfDiseaseAssociation --|> attribute : has_attribute CellLineAsAModelOfDiseaseAssociation : has_evidence CellLineAsAModelOfDiseaseAssociation --|> evidence type : has_evidence CellLineAsAModelOfDiseaseAssociation : id CellLineAsAModelOfDiseaseAssociation : iri CellLineAsAModelOfDiseaseAssociation : knowledge_source CellLineAsAModelOfDiseaseAssociation : name CellLineAsAModelOfDiseaseAssociation : negated CellLineAsAModelOfDiseaseAssociation : object CellLineAsAModelOfDiseaseAssociation --|> disease : object CellLineAsAModelOfDiseaseAssociation : object_category CellLineAsAModelOfDiseaseAssociation --|> ontology class : object_category CellLineAsAModelOfDiseaseAssociation : object_category_closure CellLineAsAModelOfDiseaseAssociation --|> ontology class : object_category_closure CellLineAsAModelOfDiseaseAssociation : object_closure CellLineAsAModelOfDiseaseAssociation : object_label_closure CellLineAsAModelOfDiseaseAssociation : object_namespace CellLineAsAModelOfDiseaseAssociation : onset_qualifier CellLineAsAModelOfDiseaseAssociation --|> onset : onset_qualifier CellLineAsAModelOfDiseaseAssociation : original_object CellLineAsAModelOfDiseaseAssociation : original_predicate CellLineAsAModelOfDiseaseAssociation : original_subject CellLineAsAModelOfDiseaseAssociation : predicate CellLineAsAModelOfDiseaseAssociation : primary_knowledge_source CellLineAsAModelOfDiseaseAssociation : publications CellLineAsAModelOfDiseaseAssociation --|> publication : publications CellLineAsAModelOfDiseaseAssociation : qualifiers CellLineAsAModelOfDiseaseAssociation --|> ontology class : qualifiers CellLineAsAModelOfDiseaseAssociation : retrieval_source_ids CellLineAsAModelOfDiseaseAssociation --|> retrieval source : retrieval_source_ids CellLineAsAModelOfDiseaseAssociation : severity_qualifier CellLineAsAModelOfDiseaseAssociation --|> severity value : severity_qualifier CellLineAsAModelOfDiseaseAssociation : subject CellLineAsAModelOfDiseaseAssociation --|> cell line : subject CellLineAsAModelOfDiseaseAssociation : subject_category CellLineAsAModelOfDiseaseAssociation --|> ontology class : subject_category CellLineAsAModelOfDiseaseAssociation : subject_category_closure CellLineAsAModelOfDiseaseAssociation --|> ontology class : subject_category_closure CellLineAsAModelOfDiseaseAssociation : subject_closure CellLineAsAModelOfDiseaseAssociation : subject_label_closure CellLineAsAModelOfDiseaseAssociation : subject_namespace CellLineAsAModelOfDiseaseAssociation : timepoint CellLineAsAModelOfDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
CellLine		 A cell line derived from an organismal entity with a disease state that is us... Association
predicate 1..1
PredicateType		 The relationship to the disease Association
object 1..1
Disease		 disease Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
severity_qualifier 0..1
SeverityValue		 a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset		 a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue		 a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:CellLineAsAModelOfDiseaseAssociation
native biolink:CellLineAsAModelOfDiseaseAssociation

LinkML Source

Direct

name: cell line as a model of disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: cell line to disease or phenotypic feature association
mixins:
- model to disease association mixin
- entity to disease association mixin
slot_usage:
  subject:
    name: subject
    description: A cell line derived from an organismal entity with a disease state
      that is used as a model of that disease.
    domain_of:
    - association
    range: cell line
defining_slots:
- subject
- predicate
- object