Class: ChemicalEntity
A chemical entity is a physical entity that pertains to chemistry or biochemistry.
classDiagram
class ChemicalEntity
PhysicalEssence <|-- ChemicalEntity
ChemicalOrDrugOrTreatment <|-- ChemicalEntity
ChemicalEntityOrGeneOrGeneProduct <|-- ChemicalEntity
ChemicalEntityOrProteinOrPolypeptide <|-- ChemicalEntity
NamedThing <|-- ChemicalEntity
ChemicalEntity <|-- MolecularEntity
ChemicalEntity <|-- ChemicalMixture
ChemicalEntity <|-- EnvironmentalFoodContaminant
ChemicalEntity <|-- FoodAdditive
ChemicalEntity : available_from
ChemicalEntity --|> DrugAvailabilityEnum : available_from
ChemicalEntity : category
ChemicalEntity : description
ChemicalEntity : full_name
ChemicalEntity : has_attribute
ChemicalEntity --|> attribute : has_attribute
ChemicalEntity : has_chemical_role
ChemicalEntity --|> chemical role : has_chemical_role
ChemicalEntity : id
ChemicalEntity : iri
ChemicalEntity : is_toxic
ChemicalEntity : max_tolerated_dose
ChemicalEntity : name
ChemicalEntity : provided_by
ChemicalEntity : synonym
ChemicalEntity : trade_name
ChemicalEntity --|> chemical entity : trade_name
ChemicalEntity : type
ChemicalEntity : xref
Inheritance
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
trade_name | 0..1 ChemicalEntity |
direct | |
available_from | 0..* DrugAvailabilityEnum |
direct | |
max_tolerated_dose | 0..1 String |
The highest dose of a drug or treatment that does not cause unacceptable side... | direct |
is_toxic | 0..1 Boolean |
direct | |
has_chemical_role | 0..* ChemicalRole |
A role is particular behaviour which a chemical entity may exhibit | direct |
provided_by | 0..* String |
The value in this node property represents the knowledge provider that create... | NamedThing |
xref | 0..* Uriorcurie |
A database cross reference or alternative identifier for a NamedThing or edge... | NamedThing |
full_name | 0..1 LabelType |
a long-form human readable name for a thing | NamedThing |
synonym | 0..* LabelType |
Alternate human-readable names for a thing | NamedThing |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 1..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
Entity | |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Usages
Identifier and Mapping Information
Valid ID Prefixes
Instances of this class should have identifiers with one of the following prefixes:
-
UNII
-
CHEBI
-
MESH
-
CAS
-
UMLS
-
ncats.drug
-
PHARMGKB.CHEMICAL
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:ChemicalEntity |
native | biolink:ChemicalEntity |
exact | CHEBI:24431, SIO:010004, WIKIDATA:Q79529, STY:T103 |
narrow | WIKIDATA:Q43460564 |
LinkML Source
Direct
name: chemical entity
id_prefixes:
- UNII
- CHEBI
- MESH
- CAS
- UMLS
- ncats.drug
- PHARMGKB.CHEMICAL
description: A chemical entity is a physical entity that pertains to chemistry or
biochemistry.
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- CHEBI:24431
- SIO:010004
- WIKIDATA:Q79529
- STY:T103
narrow_mappings:
- WIKIDATA:Q43460564
is_a: named thing
mixins:
- physical essence
- chemical or drug or treatment
- chemical entity or gene or gene product
- chemical entity or protein or polypeptide
slots:
- trade name
- available from
- max tolerated dose
- is toxic
- has chemical role