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Class: ChemicalEntity

A chemical entity is a physical entity that pertains to chemistry or biochemistry.

URI: biolink:ChemicalEntity

classDiagram class ChemicalEntity PhysicalEssence <|-- ChemicalEntity ChemicalOrDrugOrTreatment <|-- ChemicalEntity ChemicalEntityOrGeneOrGeneProduct <|-- ChemicalEntity ChemicalEntityOrProteinOrPolypeptide <|-- ChemicalEntity NamedThing <|-- ChemicalEntity ChemicalEntity <|-- MolecularEntity ChemicalEntity <|-- ChemicalMixture ChemicalEntity <|-- EnvironmentalFoodContaminant ChemicalEntity <|-- FoodAdditive ChemicalEntity : available_from ChemicalEntity --|> DrugAvailabilityEnum : available_from ChemicalEntity : category ChemicalEntity : description ChemicalEntity : full_name ChemicalEntity : has_attribute ChemicalEntity --|> attribute : has_attribute ChemicalEntity : has_chemical_role ChemicalEntity --|> chemical role : has_chemical_role ChemicalEntity : id ChemicalEntity : iri ChemicalEntity : is_toxic ChemicalEntity : max_tolerated_dose ChemicalEntity : name ChemicalEntity : provided_by ChemicalEntity : synonym ChemicalEntity : trade_name ChemicalEntity --|> chemical entity : trade_name ChemicalEntity : type ChemicalEntity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
trade_name 0..1
ChemicalEntity
direct
available_from 0..*
DrugAvailabilityEnum
direct
max_tolerated_dose 0..1
String
The highest dose of a drug or treatment that does not cause unacceptable side... direct
is_toxic 0..1
Boolean
direct
has_chemical_role 0..*
ChemicalRole
A role is particular behaviour which a chemical entity may exhibit direct
provided_by 0..*
String
The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie
A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType
a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType
Alternate human-readable names for a thing NamedThing
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 1..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Usages

used by used in type used
MolecularEntity trade_name range ChemicalEntity
ChemicalEntity trade_name range ChemicalEntity
SmallMolecule trade_name range ChemicalEntity
ChemicalMixture trade_name range ChemicalEntity
NucleicAcidEntity trade_name range ChemicalEntity
MolecularMixture trade_name range ChemicalEntity
ComplexMolecularMixture trade_name range ChemicalEntity
ProcessedMaterial trade_name range ChemicalEntity
Drug trade_name range ChemicalEntity
EnvironmentalFoodContaminant trade_name range ChemicalEntity
FoodAdditive trade_name range ChemicalEntity
Food trade_name range ChemicalEntity
Exon trade_name range ChemicalEntity
Transcript trade_name range ChemicalEntity
CodingSequence trade_name range ChemicalEntity
RNAProduct trade_name range ChemicalEntity
RNAProductIsoform trade_name range ChemicalEntity
NoncodingRNAProduct trade_name range ChemicalEntity
MicroRNA trade_name range ChemicalEntity
SiRNA trade_name range ChemicalEntity
ChemicalEntityAssessesNamedThingAssociation subject range ChemicalEntity
ChemicalToChemicalAssociation object range ChemicalEntity
ReactionToParticipantAssociation object range ChemicalEntity
ChemicalToChemicalDerivationAssociation subject range ChemicalEntity
ChemicalToChemicalDerivationAssociation object range ChemicalEntity
ChemicalToPathwayAssociation subject range ChemicalEntity
ChemicalGeneInteractionAssociation subject range ChemicalEntity
ChemicalAffectsGeneAssociation subject range ChemicalEntity
GeneAffectsChemicalAssociation object range ChemicalEntity
MolecularActivityToChemicalEntityAssociation object range ChemicalEntity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • UNII

  • CHEBI

  • MESH

  • CAS

  • UMLS

  • ncats.drug

  • PHARMGKB.CHEMICAL

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalEntity
native biolink:ChemicalEntity
exact CHEBI:24431, SIO:010004, WIKIDATA:Q79529, STY:T103
narrow WIKIDATA:Q43460564

LinkML Source

Direct

name: chemical entity
id_prefixes:
- UNII
- CHEBI
- MESH
- CAS
- UMLS
- ncats.drug
- PHARMGKB.CHEMICAL
description: A chemical entity is a physical entity that pertains to chemistry or
  biochemistry.
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- CHEBI:24431
- SIO:010004
- WIKIDATA:Q79529
- STY:T103
narrow_mappings:
- WIKIDATA:Q43460564
is_a: named thing
mixins:
- physical essence
- chemical or drug or treatment
- chemical entity or gene or gene product
- chemical entity or protein or polypeptide
slots:
- trade name
- available from
- max tolerated dose
- is toxic
- has chemical role