Class: ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
A regulatory relationship between two genes
URI: biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
classDiagram
class ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
Association <|-- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : aggregator_knowledge_source
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : category
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : description
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : has_attribute
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> attribute : has_attribute
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : has_evidence
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> evidence type : has_evidence
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : id
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : iri
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : knowledge_source
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : name
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : negated
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> gene or gene product : object
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_category
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : object_category
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_category_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : object_category_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_direction_qualifier
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> DirectionQualifierEnum : object_direction_qualifier
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_label_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_namespace
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_object
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_predicate
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_subject
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : predicate
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : primary_knowledge_source
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : publications
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> publication : publications
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : qualifiers
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : qualifiers
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : retrieval_source_ids
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> retrieval source : retrieval_source_ids
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> chemical entity or gene or gene product : subject
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_category
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : subject_category
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_category_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : subject_category_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_label_closure
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_namespace
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : timepoint
ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : type
Inheritance
- Entity
- Association
- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
object_direction_qualifier | 0..1 DirectionQualifierEnum |
direct | |
subject | 1..1 ChemicalEntityOrGeneOrGeneProduct |
connects an association to the subject of the association | Association |
predicate | 1..1 PredicateType |
the direction is always from regulator to regulated | Association |
object | 1..1 GeneOrGeneProduct |
connects an association to the object of the association | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation |
native | biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation |
LinkML Source
Direct
name: chemical entity or gene or gene product regulates gene association
description: A regulatory relationship between two genes
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slots:
- object direction qualifier
slot_usage:
predicate:
name: predicate
description: the direction is always from regulator to regulated
domain_of:
- predicate mapping
- association
subproperty_of: regulates
subject:
name: subject
domain_of:
- association
role: regulatory gene
range: chemical entity or gene or gene product
object:
name: object
domain_of:
- association
role: regulated gene
range: gene or gene product
object direction qualifier:
name: object direction qualifier
domain_of:
- predicate mapping
- gene to disease or phenotypic feature association
- chemical entity or gene or gene product regulates gene association
range: DirectionQualifierEnum