Skip to content

Class: ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation

A regulatory relationship between two genes

URI: biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation

classDiagram class ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation Association <|-- ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : aggregator_knowledge_source ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : category ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : description ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : has_attribute ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> attribute : has_attribute ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : has_evidence ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> evidence type : has_evidence ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : id ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : iri ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : knowledge_source ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : name ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : negated ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> gene or gene product : object ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_category ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : object_category ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_category_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : object_category_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_direction_qualifier ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> DirectionQualifierEnum : object_direction_qualifier ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_label_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : object_namespace ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_object ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_predicate ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : original_subject ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : predicate ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : primary_knowledge_source ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : publications ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> publication : publications ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : qualifiers ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : qualifiers ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : retrieval_source_ids ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> retrieval source : retrieval_source_ids ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> chemical entity or gene or gene product : subject ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_category ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : subject_category ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_category_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation --|> ontology class : subject_category_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_label_closure ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : subject_namespace ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : timepoint ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
object_direction_qualifier 0..1
DirectionQualifierEnum
direct
subject 1..1
ChemicalEntityOrGeneOrGeneProduct
connects an association to the subject of the association Association
predicate 1..1
PredicateType
the direction is always from regulator to regulated Association
object 1..1
GeneOrGeneProduct
connects an association to the object of the association Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation
native biolink:ChemicalEntityOrGeneOrGeneProductRegulatesGeneAssociation

LinkML Source

Direct

name: chemical entity or gene or gene product regulates gene association
description: A regulatory relationship between two genes
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slots:
- object direction qualifier
slot_usage:
  predicate:
    name: predicate
    description: the direction is always from regulator to regulated
    domain_of:
    - predicate mapping
    - association
    subproperty_of: regulates
  subject:
    name: subject
    domain_of:
    - association
    role: regulatory gene
    range: chemical entity or gene or gene product
  object:
    name: object
    domain_of:
    - association
    role: regulated gene
    range: gene or gene product
  object direction qualifier:
    name: object direction qualifier
    domain_of:
    - predicate mapping
    - gene to disease or phenotypic feature association
    - chemical entity or gene or gene product regulates gene association
    range: DirectionQualifierEnum