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Class: ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation

This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disesae or phenotypic feature is a secondary, typically (but not always) undesirable effect.

URI: biolink:ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation

classDiagram class ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation ChemicalToEntityAssociationMixin <|-- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation <|-- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : aggregator_knowledge_source ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : category ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : description ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : FDA_adverse_event_level ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> FDAIDAAdverseEventEnum : FDA_adverse_event_level ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : has_attribute ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> attribute : has_attribute ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : has_evidence ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> evidence type : has_evidence ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : id ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : iri ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : knowledge_source ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : name ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : negated ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> disease or phenotypic feature : object ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object_category ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object_category_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object_label_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : object_namespace ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : original_object ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : original_predicate ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : original_subject ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : predicate ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : primary_knowledge_source ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : publications ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> publication : publications ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : qualifiers ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> ontology class : qualifiers ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : retrieval_source_ids ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> chemical entity or gene or gene product : subject ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject_category ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject_category_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject_label_closure ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : subject_namespace ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : timepoint ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
FDA_adverse_event_level 0..1
FDAIDAAdverseEventEnum
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
subject 1..1
ChemicalEntityOrGeneOrGeneProduct
the chemical entity or entity that is an interactor Association
predicate 1..1
PredicateType
A high-level grouping for the relationship type Association
object 1..1
DiseaseOrPhenotypicFeature
disease or phenotype Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation
native biolink:ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation

LinkML Source

Direct

name: chemical or drug or treatment side effect disease or phenotypic feature association
description: This association defines a relationship between a chemical or treatment
  (or procedure) and a disease or phenotypic feature where the disesae or phenotypic
  feature is a secondary, typically (but not always) undesirable effect.
from_schema: https://w3id.org/biolink/biolink-model
is_a: chemical or drug or treatment to disease or phenotypic feature association
mixins:
- chemical to entity association mixin
- entity to disease or phenotypic feature association mixin
slot_usage:
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: has side effect
defining_slots:
- subject
- predicate
- object