Class: ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
This association defines a relationship between a chemical or treatment (or procedure) and a disease or phenotypic feature where the disesae or phenotypic feature is a secondary undesirable effect.
URI: biolink:ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
classDiagram
class ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
ChemicalToEntityAssociationMixin <|-- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
Association <|-- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation <|-- ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : aggregator_knowledge_source
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : category
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : description
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : FDA_adverse_event_level
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> FDAIDAAdverseEventEnum : FDA_adverse_event_level
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : has_attribute
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> attribute : has_attribute
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : has_evidence
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> evidence type : has_evidence
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : id
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : iri
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : knowledge_source
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : name
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : negated
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> disease or phenotypic feature : object
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object_category
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object_category_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object_label_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : object_namespace
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : original_object
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : original_predicate
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : original_subject
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : predicate
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : primary_knowledge_source
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : publications
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> publication : publications
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : qualifiers
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : qualifiers
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : retrieval_source_ids
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> chemical entity or gene or gene product : subject
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject_category
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject_category_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject_label_closure
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : subject_namespace
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : timepoint
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation : type
Inheritance
- Entity
- Association
- ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation [ ChemicalToEntityAssociationMixin EntityToDiseaseOrPhenotypicFeatureAssociationMixin]
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
FDA_adverse_event_level | 0..1 FDAIDAAdverseEventEnum |
direct | |
subject | 1..1 ChemicalEntityOrGeneOrGeneProduct |
the chemical entity or entity that is an interactor | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 DiseaseOrPhenotypicFeature |
disease or phenotype | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation |
native | biolink:ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation |
LinkML Source
Direct
name: chemical or drug or treatment to disease or phenotypic feature association
description: This association defines a relationship between a chemical or treatment
(or procedure) and a disease or phenotypic feature where the disesae or phenotypic
feature is a secondary undesirable effect.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- chemical to entity association mixin
- entity to disease or phenotypic feature association mixin
slots:
- FDA adverse event level
slot_usage:
predicate:
name: predicate
domain_of:
- predicate mapping
- association
subproperty_of: has adverse event
defining_slots:
- subject
- predicate
- object