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Class: ChemicalToChemicalAssociation

A relationship between two chemical entities. This can encompass actual interactions as well as temporal causal edges, e.g. one chemical converted to another.

URI: biolink:ChemicalToChemicalAssociation

classDiagram class ChemicalToChemicalAssociation ChemicalToEntityAssociationMixin <|-- ChemicalToChemicalAssociation Association <|-- ChemicalToChemicalAssociation ChemicalToChemicalAssociation <|-- ReactionToParticipantAssociation ChemicalToChemicalAssociation <|-- ChemicalToChemicalDerivationAssociation ChemicalToChemicalAssociation : aggregator_knowledge_source ChemicalToChemicalAssociation : category ChemicalToChemicalAssociation : description ChemicalToChemicalAssociation : has_attribute ChemicalToChemicalAssociation --|> attribute : has_attribute ChemicalToChemicalAssociation : has_evidence ChemicalToChemicalAssociation --|> evidence type : has_evidence ChemicalToChemicalAssociation : id ChemicalToChemicalAssociation : iri ChemicalToChemicalAssociation : knowledge_source ChemicalToChemicalAssociation : name ChemicalToChemicalAssociation : negated ChemicalToChemicalAssociation : object ChemicalToChemicalAssociation --|> chemical entity : object ChemicalToChemicalAssociation : object_category ChemicalToChemicalAssociation --|> ontology class : object_category ChemicalToChemicalAssociation : object_category_closure ChemicalToChemicalAssociation --|> ontology class : object_category_closure ChemicalToChemicalAssociation : object_closure ChemicalToChemicalAssociation : object_label_closure ChemicalToChemicalAssociation : object_namespace ChemicalToChemicalAssociation : original_object ChemicalToChemicalAssociation : original_predicate ChemicalToChemicalAssociation : original_subject ChemicalToChemicalAssociation : predicate ChemicalToChemicalAssociation : primary_knowledge_source ChemicalToChemicalAssociation : publications ChemicalToChemicalAssociation --|> publication : publications ChemicalToChemicalAssociation : qualifiers ChemicalToChemicalAssociation --|> ontology class : qualifiers ChemicalToChemicalAssociation : retrieval_source_ids ChemicalToChemicalAssociation --|> retrieval source : retrieval_source_ids ChemicalToChemicalAssociation : subject ChemicalToChemicalAssociation --|> chemical entity or gene or gene product : subject ChemicalToChemicalAssociation : subject_category ChemicalToChemicalAssociation --|> ontology class : subject_category ChemicalToChemicalAssociation : subject_category_closure ChemicalToChemicalAssociation --|> ontology class : subject_category_closure ChemicalToChemicalAssociation : subject_closure ChemicalToChemicalAssociation : subject_label_closure ChemicalToChemicalAssociation : subject_namespace ChemicalToChemicalAssociation : timepoint ChemicalToChemicalAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
ChemicalEntityOrGeneOrGeneProduct		 the chemical entity or entity that is an interactor Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
ChemicalEntity		 the chemical element that is the target of the statement Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalToChemicalAssociation
native biolink:ChemicalToChemicalAssociation

LinkML Source

Direct

name: chemical to chemical association
description: A relationship between two chemical entities. This can encompass actual
  interactions as well as temporal causal edges, e.g. one chemical converted to another.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- chemical to entity association mixin
slot_usage:
  object:
    name: object
    description: the chemical element that is the target of the statement
    domain_of:
    - association
    range: chemical entity
defining_slots:
- subject
- object