Class: ChemicalToChemicalDerivationAssociation
A causal relationship between two chemical entities, where the subject represents the upstream entity and the object represents the downstream. For any such association there is an implicit reaction:
_ IF_
_ R has-input C1 AND_
_ R has-output C2 AND_
_ R enabled-by P AND_
_ R type Reaction_
_ THEN_
_ C1 derives-into C2 <
URI: biolink:ChemicalToChemicalDerivationAssociation
classDiagram
class ChemicalToChemicalDerivationAssociation
ChemicalToChemicalAssociation <|-- ChemicalToChemicalDerivationAssociation
ChemicalToChemicalDerivationAssociation : aggregator_knowledge_source
ChemicalToChemicalDerivationAssociation : catalyst_qualifier
ChemicalToChemicalDerivationAssociation --|> macromolecular machine mixin : catalyst_qualifier
ChemicalToChemicalDerivationAssociation : category
ChemicalToChemicalDerivationAssociation : description
ChemicalToChemicalDerivationAssociation : has_attribute
ChemicalToChemicalDerivationAssociation --|> attribute : has_attribute
ChemicalToChemicalDerivationAssociation : has_evidence
ChemicalToChemicalDerivationAssociation --|> evidence type : has_evidence
ChemicalToChemicalDerivationAssociation : id
ChemicalToChemicalDerivationAssociation : iri
ChemicalToChemicalDerivationAssociation : knowledge_source
ChemicalToChemicalDerivationAssociation : name
ChemicalToChemicalDerivationAssociation : negated
ChemicalToChemicalDerivationAssociation : object
ChemicalToChemicalDerivationAssociation --|> chemical entity : object
ChemicalToChemicalDerivationAssociation : object_category
ChemicalToChemicalDerivationAssociation --|> ontology class : object_category
ChemicalToChemicalDerivationAssociation : object_category_closure
ChemicalToChemicalDerivationAssociation --|> ontology class : object_category_closure
ChemicalToChemicalDerivationAssociation : object_closure
ChemicalToChemicalDerivationAssociation : object_label_closure
ChemicalToChemicalDerivationAssociation : object_namespace
ChemicalToChemicalDerivationAssociation : original_object
ChemicalToChemicalDerivationAssociation : original_predicate
ChemicalToChemicalDerivationAssociation : original_subject
ChemicalToChemicalDerivationAssociation : predicate
ChemicalToChemicalDerivationAssociation : primary_knowledge_source
ChemicalToChemicalDerivationAssociation : publications
ChemicalToChemicalDerivationAssociation --|> publication : publications
ChemicalToChemicalDerivationAssociation : qualifiers
ChemicalToChemicalDerivationAssociation --|> ontology class : qualifiers
ChemicalToChemicalDerivationAssociation : retrieval_source_ids
ChemicalToChemicalDerivationAssociation --|> retrieval source : retrieval_source_ids
ChemicalToChemicalDerivationAssociation : subject
ChemicalToChemicalDerivationAssociation --|> chemical entity : subject
ChemicalToChemicalDerivationAssociation : subject_category
ChemicalToChemicalDerivationAssociation --|> ontology class : subject_category
ChemicalToChemicalDerivationAssociation : subject_category_closure
ChemicalToChemicalDerivationAssociation --|> ontology class : subject_category_closure
ChemicalToChemicalDerivationAssociation : subject_closure
ChemicalToChemicalDerivationAssociation : subject_label_closure
ChemicalToChemicalDerivationAssociation : subject_namespace
ChemicalToChemicalDerivationAssociation : timepoint
ChemicalToChemicalDerivationAssociation : type
Inheritance
- Entity
- Association
- ChemicalToChemicalAssociation [ ChemicalToEntityAssociationMixin]
- ChemicalToChemicalDerivationAssociation
- ChemicalToChemicalAssociation [ ChemicalToEntityAssociationMixin]
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
catalyst_qualifier | 0..* MacromolecularMachineMixin |
this connects the derivation edge to the chemical entity that catalyzes the r... | direct |
subject | 1..1 ChemicalEntity |
the upstream chemical entity | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 ChemicalEntity |
the downstream chemical entity | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:ChemicalToChemicalDerivationAssociation |
native | biolink:ChemicalToChemicalDerivationAssociation |
LinkML Source
Direct
name: chemical to chemical derivation association
description: "A causal relationship between two chemical entities, where the subject\
\ represents the upstream entity and the object represents the downstream. For any\
\ such association there is an implicit reaction:\n IF\n R has-input C1 AND\n\
\ R has-output C2 AND\n R enabled-by P AND\n R type Reaction\n THEN\n C1 derives-into\
\ C2 <<catalyst qualifier P>>"
from_schema: https://w3id.org/biolink/biolink-model
is_a: chemical to chemical association
slots:
- catalyst qualifier
slot_usage:
subject:
name: subject
description: the upstream chemical entity
domain_of:
- association
range: chemical entity
object:
name: object
description: the downstream chemical entity
domain_of:
- association
range: chemical entity
predicate:
name: predicate
domain_of:
- predicate mapping
- association
subproperty_of: derives into
catalyst qualifier:
name: catalyst qualifier
description: this connects the derivation edge to the chemical entity that catalyzes
the reaction that causes the subject chemical to transform into the object chemical.
domain_of:
- chemical to chemical derivation association
defining_slots:
- subject
- predicate
- object