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Class: ChemicalToDiseaseOrPhenotypicFeatureAssociation

An interaction between a chemical entity and a phenotype or disease, where the presence of the chemical gives rise to or exacerbates the phenotype.

URI: biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation

classDiagram class ChemicalToDiseaseOrPhenotypicFeatureAssociation ChemicalToEntityAssociationMixin <|-- ChemicalToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- ChemicalToDiseaseOrPhenotypicFeatureAssociation Association <|-- ChemicalToDiseaseOrPhenotypicFeatureAssociation ChemicalToDiseaseOrPhenotypicFeatureAssociation : aggregator_knowledge_source ChemicalToDiseaseOrPhenotypicFeatureAssociation : category ChemicalToDiseaseOrPhenotypicFeatureAssociation : description ChemicalToDiseaseOrPhenotypicFeatureAssociation : has_attribute ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> attribute : has_attribute ChemicalToDiseaseOrPhenotypicFeatureAssociation : has_evidence ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> evidence type : has_evidence ChemicalToDiseaseOrPhenotypicFeatureAssociation : id ChemicalToDiseaseOrPhenotypicFeatureAssociation : iri ChemicalToDiseaseOrPhenotypicFeatureAssociation : knowledge_source ChemicalToDiseaseOrPhenotypicFeatureAssociation : name ChemicalToDiseaseOrPhenotypicFeatureAssociation : negated ChemicalToDiseaseOrPhenotypicFeatureAssociation : object ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> disease or phenotypic feature : object ChemicalToDiseaseOrPhenotypicFeatureAssociation : object_category ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category ChemicalToDiseaseOrPhenotypicFeatureAssociation : object_category_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : object_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : object_label_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : object_namespace ChemicalToDiseaseOrPhenotypicFeatureAssociation : original_object ChemicalToDiseaseOrPhenotypicFeatureAssociation : original_predicate ChemicalToDiseaseOrPhenotypicFeatureAssociation : original_subject ChemicalToDiseaseOrPhenotypicFeatureAssociation : predicate ChemicalToDiseaseOrPhenotypicFeatureAssociation : primary_knowledge_source ChemicalToDiseaseOrPhenotypicFeatureAssociation : publications ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> publication : publications ChemicalToDiseaseOrPhenotypicFeatureAssociation : qualifiers ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : qualifiers ChemicalToDiseaseOrPhenotypicFeatureAssociation : retrieval_source_ids ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> chemical entity or gene or gene product : subject ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject_category ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject_category_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject_label_closure ChemicalToDiseaseOrPhenotypicFeatureAssociation : subject_namespace ChemicalToDiseaseOrPhenotypicFeatureAssociation : timepoint ChemicalToDiseaseOrPhenotypicFeatureAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
ChemicalEntityOrGeneOrGeneProduct		 the chemical entity or entity that is an interactor Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
DiseaseOrPhenotypicFeature		 the disease or phenotype that is affected by the chemical Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation
native biolink:ChemicalToDiseaseOrPhenotypicFeatureAssociation
narrow SIO:000993

LinkML Source

Direct

name: chemical to disease or phenotypic feature association
description: An interaction between a chemical entity and a phenotype or disease,
  where the presence of the chemical gives rise to or exacerbates the phenotype.
from_schema: https://w3id.org/biolink/biolink-model
narrow_mappings:
- SIO:000993
is_a: association
mixins:
- chemical to entity association mixin
- entity to disease or phenotypic feature association mixin
slot_usage:
  object:
    name: object
    description: the disease or phenotype that is affected by the chemical
    domain_of:
    - association
    range: disease or phenotypic feature
defining_slots:
- subject
- object