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Class: ChemicalToPathwayAssociation

An interaction between a chemical entity and a biological process or pathway.

URI: biolink:ChemicalToPathwayAssociation

classDiagram class ChemicalToPathwayAssociation ChemicalToEntityAssociationMixin <|-- ChemicalToPathwayAssociation Association <|-- ChemicalToPathwayAssociation ChemicalToPathwayAssociation : aggregator_knowledge_source ChemicalToPathwayAssociation : category ChemicalToPathwayAssociation : description ChemicalToPathwayAssociation : has_attribute ChemicalToPathwayAssociation --|> attribute : has_attribute ChemicalToPathwayAssociation : has_evidence ChemicalToPathwayAssociation --|> evidence type : has_evidence ChemicalToPathwayAssociation : id ChemicalToPathwayAssociation : iri ChemicalToPathwayAssociation : knowledge_source ChemicalToPathwayAssociation : name ChemicalToPathwayAssociation : negated ChemicalToPathwayAssociation : object ChemicalToPathwayAssociation --|> pathway : object ChemicalToPathwayAssociation : object_category ChemicalToPathwayAssociation --|> ontology class : object_category ChemicalToPathwayAssociation : object_category_closure ChemicalToPathwayAssociation --|> ontology class : object_category_closure ChemicalToPathwayAssociation : object_closure ChemicalToPathwayAssociation : object_label_closure ChemicalToPathwayAssociation : object_namespace ChemicalToPathwayAssociation : original_object ChemicalToPathwayAssociation : original_predicate ChemicalToPathwayAssociation : original_subject ChemicalToPathwayAssociation : predicate ChemicalToPathwayAssociation : primary_knowledge_source ChemicalToPathwayAssociation : publications ChemicalToPathwayAssociation --|> publication : publications ChemicalToPathwayAssociation : qualifiers ChemicalToPathwayAssociation --|> ontology class : qualifiers ChemicalToPathwayAssociation : retrieval_source_ids ChemicalToPathwayAssociation --|> retrieval source : retrieval_source_ids ChemicalToPathwayAssociation : subject ChemicalToPathwayAssociation --|> chemical entity : subject ChemicalToPathwayAssociation : subject_category ChemicalToPathwayAssociation --|> ontology class : subject_category ChemicalToPathwayAssociation : subject_category_closure ChemicalToPathwayAssociation --|> ontology class : subject_category_closure ChemicalToPathwayAssociation : subject_closure ChemicalToPathwayAssociation : subject_label_closure ChemicalToPathwayAssociation : subject_namespace ChemicalToPathwayAssociation : timepoint ChemicalToPathwayAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
ChemicalEntity		 the chemical entity that is affecting the pathway Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
Pathway		 the pathway that is affected by the chemical Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ChemicalToPathwayAssociation
native biolink:ChemicalToPathwayAssociation
exact SIO:001250

LinkML Source

Direct

name: chemical to pathway association
description: An interaction between a chemical entity and a biological process or
  pathway.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- SIO:001250
is_a: association
mixins:
- chemical to entity association mixin
slot_usage:
  subject:
    name: subject
    description: the chemical entity that is affecting the pathway
    domain_of:
    - association
    range: chemical entity
  object:
    name: object
    description: the pathway that is affected by the chemical
    domain_of:
    - association
    range: pathway
defining_slots:
- subject
- object