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Class: ClinicalFinding

this category is currently considered broad enough to tag clinical lab measurements and other biological attributes taken as 'clinical traits' with some statistical score, for example, a p value in genetic associations.

URI: biolink:ClinicalFinding

classDiagram class ClinicalFinding PhenotypicFeature <|-- ClinicalFinding ClinicalFinding : category ClinicalFinding : description ClinicalFinding : full_name ClinicalFinding : has_attribute ClinicalFinding --|> clinical attribute : has_attribute ClinicalFinding : id ClinicalFinding : in_taxon ClinicalFinding --|> organism taxon : in_taxon ClinicalFinding : in_taxon_label ClinicalFinding : iri ClinicalFinding : name ClinicalFinding : provided_by ClinicalFinding : synonym ClinicalFinding : type ClinicalFinding : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
ClinicalAttribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • LOINC

  • NCIT

  • EFO

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ClinicalFinding
native biolink:ClinicalFinding

LinkML Source

Direct

name: clinical finding
id_prefixes:
- LOINC
- NCIT
- EFO
description: this category is currently considered broad enough to tag clinical lab
  measurements and other biological attributes taken as 'clinical traits' with some
  statistical score, for example, a p value in genetic associations.
from_schema: https://w3id.org/biolink/biolink-model
is_a: phenotypic feature
slot_usage:
  has attribute:
    name: has attribute
    domain_of:
    - entity
    range: clinical attribute