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Class: CodingSequence

URI: biolink:CodingSequence

classDiagram class CodingSequence NucleicAcidEntity <|-- CodingSequence CodingSequence : available_from CodingSequence --|> DrugAvailabilityEnum : available_from CodingSequence : category CodingSequence : description CodingSequence : full_name CodingSequence : has_attribute CodingSequence --|> attribute : has_attribute CodingSequence : has_biological_sequence CodingSequence : has_chemical_role CodingSequence --|> chemical role : has_chemical_role CodingSequence : id CodingSequence : in_taxon CodingSequence --|> organism taxon : in_taxon CodingSequence : in_taxon_label CodingSequence : iri CodingSequence : is_metabolite CodingSequence : is_toxic CodingSequence : max_tolerated_dose CodingSequence : name CodingSequence : provided_by CodingSequence : synonym CodingSequence : trade_name CodingSequence --|> chemical entity : trade_name CodingSequence : type CodingSequence : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
is_metabolite 0..1
Boolean		 indicates whether a molecular entity is a metabolite MolecularEntity
trade_name 0..1
ChemicalEntity		 ChemicalEntity
available_from 0..*
DrugAvailabilityEnum		 ChemicalEntity
max_tolerated_dose 0..1
String		 The highest dose of a drug or treatment that does not cause unacceptable side... ChemicalEntity
is_toxic 0..1
Boolean		 ChemicalEntity
has_chemical_role 0..*
ChemicalRole		 A role is particular behaviour which a chemical entity may exhibit ChemicalEntity
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
GenomicSequenceLocalization phase domain CodingSequence

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:CodingSequence
native biolink:CodingSequence
exact SO:0000316, SIO:001390

LinkML Source

Direct

name: coding sequence
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- SO:0000316
- SIO:001390
is_a: nucleic acid entity