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Class: CorrelatedGeneToDiseaseAssociation

URI: biolink:CorrelatedGeneToDiseaseAssociation

classDiagram class CorrelatedGeneToDiseaseAssociation EntityToDiseaseAssociationMixin <|-- CorrelatedGeneToDiseaseAssociation GeneToEntityAssociationMixin <|-- CorrelatedGeneToDiseaseAssociation GeneToDiseaseAssociation <|-- CorrelatedGeneToDiseaseAssociation CorrelatedGeneToDiseaseAssociation : aggregator_knowledge_source CorrelatedGeneToDiseaseAssociation : category CorrelatedGeneToDiseaseAssociation : description CorrelatedGeneToDiseaseAssociation : frequency_qualifier CorrelatedGeneToDiseaseAssociation : has_attribute CorrelatedGeneToDiseaseAssociation --|> attribute : has_attribute CorrelatedGeneToDiseaseAssociation : has_count CorrelatedGeneToDiseaseAssociation : has_evidence CorrelatedGeneToDiseaseAssociation --|> evidence type : has_evidence CorrelatedGeneToDiseaseAssociation : has_percentage CorrelatedGeneToDiseaseAssociation : has_quotient CorrelatedGeneToDiseaseAssociation : has_total CorrelatedGeneToDiseaseAssociation : id CorrelatedGeneToDiseaseAssociation : iri CorrelatedGeneToDiseaseAssociation : knowledge_source CorrelatedGeneToDiseaseAssociation : name CorrelatedGeneToDiseaseAssociation : negated CorrelatedGeneToDiseaseAssociation : object CorrelatedGeneToDiseaseAssociation --|> disease : object CorrelatedGeneToDiseaseAssociation : object_category CorrelatedGeneToDiseaseAssociation --|> ontology class : object_category CorrelatedGeneToDiseaseAssociation : object_category_closure CorrelatedGeneToDiseaseAssociation --|> ontology class : object_category_closure CorrelatedGeneToDiseaseAssociation : object_closure CorrelatedGeneToDiseaseAssociation : object_direction_qualifier CorrelatedGeneToDiseaseAssociation --|> DirectionQualifierEnum : object_direction_qualifier CorrelatedGeneToDiseaseAssociation : object_label_closure CorrelatedGeneToDiseaseAssociation : object_namespace CorrelatedGeneToDiseaseAssociation : onset_qualifier CorrelatedGeneToDiseaseAssociation --|> onset : onset_qualifier CorrelatedGeneToDiseaseAssociation : original_object CorrelatedGeneToDiseaseAssociation : original_predicate CorrelatedGeneToDiseaseAssociation : original_subject CorrelatedGeneToDiseaseAssociation : predicate CorrelatedGeneToDiseaseAssociation : primary_knowledge_source CorrelatedGeneToDiseaseAssociation : publications CorrelatedGeneToDiseaseAssociation --|> publication : publications CorrelatedGeneToDiseaseAssociation : qualifiers CorrelatedGeneToDiseaseAssociation --|> ontology class : qualifiers CorrelatedGeneToDiseaseAssociation : retrieval_source_ids CorrelatedGeneToDiseaseAssociation --|> retrieval source : retrieval_source_ids CorrelatedGeneToDiseaseAssociation : severity_qualifier CorrelatedGeneToDiseaseAssociation --|> severity value : severity_qualifier CorrelatedGeneToDiseaseAssociation : sex_qualifier CorrelatedGeneToDiseaseAssociation --|> biological sex : sex_qualifier CorrelatedGeneToDiseaseAssociation : subject CorrelatedGeneToDiseaseAssociation --|> gene or gene product : subject CorrelatedGeneToDiseaseAssociation : subject_aspect_qualifier CorrelatedGeneToDiseaseAssociation --|> GeneOrGeneProductOrChemicalEntityAspectEnum : subject_aspect_qualifier CorrelatedGeneToDiseaseAssociation : subject_category CorrelatedGeneToDiseaseAssociation --|> ontology class : subject_category CorrelatedGeneToDiseaseAssociation : subject_category_closure CorrelatedGeneToDiseaseAssociation --|> ontology class : subject_category_closure CorrelatedGeneToDiseaseAssociation : subject_closure CorrelatedGeneToDiseaseAssociation : subject_label_closure CorrelatedGeneToDiseaseAssociation : subject_namespace CorrelatedGeneToDiseaseAssociation : timepoint CorrelatedGeneToDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject_aspect_qualifier 0..1
GeneOrGeneProductOrChemicalEntityAspectEnum
GeneToDiseaseOrPhenotypicFeatureAssociation
object_direction_qualifier 0..1
DirectionQualifierEnum
GeneToDiseaseOrPhenotypicFeatureAssociation
sex_qualifier 0..1
BiologicalSex
a qualifier used in a phenotypic association to state whether the association... EntityToPhenotypicFeatureAssociationMixin
subject 1..1
GeneOrGeneProduct
gene in which variation is shown to correlate with the disease Association
predicate 1..1
PredicateType
A high-level grouping for the relationship type Association
object 1..1
Disease
disease Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity
has_count 0..1
Integer
number of things with a particular property FrequencyQuantifier
has_total 0..1
Integer
total number of things in a particular reference set FrequencyQuantifier
has_quotient 0..1
Double
FrequencyQuantifier
has_percentage 0..1
Double
equivalent to has quotient multiplied by 100 FrequencyQuantifier
severity_qualifier 0..1
SeverityValue
a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset
a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue
a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:CorrelatedGeneToDiseaseAssociation
native biolink:CorrelatedGeneToDiseaseAssociation

LinkML Source

Direct

name: correlated gene to disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene to disease association
mixins:
- entity to disease association mixin
- gene to entity association mixin
slot_usage:
  subject:
    name: subject
    description: gene in which variation is shown to correlate with the disease.
    domain_of:
    - association
    range: gene or gene product
  object:
    name: object
    domain_of:
    - association
    range: disease
defining_slots:
- subject
- object