Class: CorrelatedGeneToDiseaseAssociation
URI: biolink:CorrelatedGeneToDiseaseAssociation
classDiagram
class CorrelatedGeneToDiseaseAssociation
EntityToDiseaseAssociationMixin <|-- CorrelatedGeneToDiseaseAssociation
GeneToEntityAssociationMixin <|-- CorrelatedGeneToDiseaseAssociation
GeneToDiseaseAssociation <|-- CorrelatedGeneToDiseaseAssociation
CorrelatedGeneToDiseaseAssociation : aggregator_knowledge_source
CorrelatedGeneToDiseaseAssociation : category
CorrelatedGeneToDiseaseAssociation : description
CorrelatedGeneToDiseaseAssociation : frequency_qualifier
CorrelatedGeneToDiseaseAssociation : has_attribute
CorrelatedGeneToDiseaseAssociation --|> attribute : has_attribute
CorrelatedGeneToDiseaseAssociation : has_count
CorrelatedGeneToDiseaseAssociation : has_evidence
CorrelatedGeneToDiseaseAssociation --|> evidence type : has_evidence
CorrelatedGeneToDiseaseAssociation : has_percentage
CorrelatedGeneToDiseaseAssociation : has_quotient
CorrelatedGeneToDiseaseAssociation : has_total
CorrelatedGeneToDiseaseAssociation : id
CorrelatedGeneToDiseaseAssociation : iri
CorrelatedGeneToDiseaseAssociation : knowledge_source
CorrelatedGeneToDiseaseAssociation : name
CorrelatedGeneToDiseaseAssociation : negated
CorrelatedGeneToDiseaseAssociation : object
CorrelatedGeneToDiseaseAssociation --|> disease : object
CorrelatedGeneToDiseaseAssociation : object_category
CorrelatedGeneToDiseaseAssociation --|> ontology class : object_category
CorrelatedGeneToDiseaseAssociation : object_category_closure
CorrelatedGeneToDiseaseAssociation --|> ontology class : object_category_closure
CorrelatedGeneToDiseaseAssociation : object_closure
CorrelatedGeneToDiseaseAssociation : object_direction_qualifier
CorrelatedGeneToDiseaseAssociation --|> DirectionQualifierEnum : object_direction_qualifier
CorrelatedGeneToDiseaseAssociation : object_label_closure
CorrelatedGeneToDiseaseAssociation : object_namespace
CorrelatedGeneToDiseaseAssociation : onset_qualifier
CorrelatedGeneToDiseaseAssociation --|> onset : onset_qualifier
CorrelatedGeneToDiseaseAssociation : original_object
CorrelatedGeneToDiseaseAssociation : original_predicate
CorrelatedGeneToDiseaseAssociation : original_subject
CorrelatedGeneToDiseaseAssociation : predicate
CorrelatedGeneToDiseaseAssociation : primary_knowledge_source
CorrelatedGeneToDiseaseAssociation : publications
CorrelatedGeneToDiseaseAssociation --|> publication : publications
CorrelatedGeneToDiseaseAssociation : qualifiers
CorrelatedGeneToDiseaseAssociation --|> ontology class : qualifiers
CorrelatedGeneToDiseaseAssociation : retrieval_source_ids
CorrelatedGeneToDiseaseAssociation --|> retrieval source : retrieval_source_ids
CorrelatedGeneToDiseaseAssociation : severity_qualifier
CorrelatedGeneToDiseaseAssociation --|> severity value : severity_qualifier
CorrelatedGeneToDiseaseAssociation : sex_qualifier
CorrelatedGeneToDiseaseAssociation --|> biological sex : sex_qualifier
CorrelatedGeneToDiseaseAssociation : subject
CorrelatedGeneToDiseaseAssociation --|> gene or gene product : subject
CorrelatedGeneToDiseaseAssociation : subject_aspect_qualifier
CorrelatedGeneToDiseaseAssociation --|> GeneOrGeneProductOrChemicalEntityAspectEnum : subject_aspect_qualifier
CorrelatedGeneToDiseaseAssociation : subject_category
CorrelatedGeneToDiseaseAssociation --|> ontology class : subject_category
CorrelatedGeneToDiseaseAssociation : subject_category_closure
CorrelatedGeneToDiseaseAssociation --|> ontology class : subject_category_closure
CorrelatedGeneToDiseaseAssociation : subject_closure
CorrelatedGeneToDiseaseAssociation : subject_label_closure
CorrelatedGeneToDiseaseAssociation : subject_namespace
CorrelatedGeneToDiseaseAssociation : timepoint
CorrelatedGeneToDiseaseAssociation : type
Inheritance
- Entity
- Association
- GeneToDiseaseOrPhenotypicFeatureAssociation [ EntityToPhenotypicFeatureAssociationMixin GeneToEntityAssociationMixin]
- GeneToDiseaseAssociation [ EntityToDiseaseAssociationMixin GeneToEntityAssociationMixin]
- CorrelatedGeneToDiseaseAssociation [ EntityToDiseaseAssociationMixin GeneToEntityAssociationMixin]
- GeneToDiseaseAssociation [ EntityToDiseaseAssociationMixin GeneToEntityAssociationMixin]
- GeneToDiseaseOrPhenotypicFeatureAssociation [ EntityToPhenotypicFeatureAssociationMixin GeneToEntityAssociationMixin]
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
subject_aspect_qualifier | 0..1 GeneOrGeneProductOrChemicalEntityAspectEnum |
GeneToDiseaseOrPhenotypicFeatureAssociation | |
object_direction_qualifier | 0..1 DirectionQualifierEnum |
GeneToDiseaseOrPhenotypicFeatureAssociation | |
sex_qualifier | 0..1 BiologicalSex |
a qualifier used in a phenotypic association to state whether the association... | EntityToPhenotypicFeatureAssociationMixin |
subject | 1..1 GeneOrGeneProduct |
gene in which variation is shown to correlate with the disease | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 Disease |
disease | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
has_count | 0..1 Integer |
number of things with a particular property | FrequencyQuantifier |
has_total | 0..1 Integer |
total number of things in a particular reference set | FrequencyQuantifier |
has_quotient | 0..1 Double |
FrequencyQuantifier | |
has_percentage | 0..1 Double |
equivalent to has quotient multiplied by 100 | FrequencyQuantifier |
severity_qualifier | 0..1 SeverityValue |
a qualifier used in a phenotypic association to state how severe the phenotyp... | EntityToFeatureOrDiseaseQualifiersMixin |
onset_qualifier | 0..1 Onset |
a qualifier used in a phenotypic association to state when the phenotype appe... | EntityToFeatureOrDiseaseQualifiersMixin |
frequency_qualifier | 0..1 FrequencyValue |
a qualifier used in a phenotypic association to state how frequent the phenot... | FrequencyQualifierMixin |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:CorrelatedGeneToDiseaseAssociation |
native | biolink:CorrelatedGeneToDiseaseAssociation |
LinkML Source
Direct
name: correlated gene to disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene to disease association
mixins:
- entity to disease association mixin
- gene to entity association mixin
slot_usage:
subject:
name: subject
description: gene in which variation is shown to correlate with the disease.
domain_of:
- association
range: gene or gene product
object:
name: object
domain_of:
- association
range: disease
defining_slots:
- subject
- object