Skip to content

Class: DiseaseOrPhenotypicFeature

Either one of a disease or an individual phenotypic feature. Some knowledge resources such as Monarch treat these as distinct, others such as MESH conflate. Please see definitions of phenotypic feature and disease in this model for their independent descriptions. This class is helpful to enforce domains and ranges that may involve either a disease or a phenotypic feature.

URI: biolink:DiseaseOrPhenotypicFeature

classDiagram class DiseaseOrPhenotypicFeature BiologicalEntity <|-- DiseaseOrPhenotypicFeature DiseaseOrPhenotypicFeature <|-- Disease DiseaseOrPhenotypicFeature <|-- PhenotypicFeature DiseaseOrPhenotypicFeature : category DiseaseOrPhenotypicFeature : description DiseaseOrPhenotypicFeature : full_name DiseaseOrPhenotypicFeature : has_attribute DiseaseOrPhenotypicFeature --|> attribute : has_attribute DiseaseOrPhenotypicFeature : id DiseaseOrPhenotypicFeature : in_taxon DiseaseOrPhenotypicFeature --|> organism taxon : in_taxon DiseaseOrPhenotypicFeature : in_taxon_label DiseaseOrPhenotypicFeature : iri DiseaseOrPhenotypicFeature : name DiseaseOrPhenotypicFeature : provided_by DiseaseOrPhenotypicFeature : synonym DiseaseOrPhenotypicFeature : type DiseaseOrPhenotypicFeature : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
GeneExpressionMixin phenotypic_state range DiseaseOrPhenotypicFeature
GeneToGeneCoexpressionAssociation phenotypic_state range DiseaseOrPhenotypicFeature
CellLineToDiseaseOrPhenotypicFeatureAssociation subject range DiseaseOrPhenotypicFeature
CellLineToDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
ChemicalToDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
ChemicalOrDrugOrTreatmentToDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
ChemicalOrDrugOrTreatmentSideEffectDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
MaterialSampleToDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
DiseaseOrPhenotypicFeatureToLocationAssociation subject range DiseaseOrPhenotypicFeature
DiseaseOrPhenotypicFeatureToGeneticInheritanceAssociation subject range DiseaseOrPhenotypicFeature
GeneToDiseaseOrPhenotypicFeatureAssociation object range DiseaseOrPhenotypicFeature
VariantToGeneExpressionAssociation phenotypic_state range DiseaseOrPhenotypicFeature

Aliases

  • phenome

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:DiseaseOrPhenotypicFeature
native biolink:DiseaseOrPhenotypicFeature
narrow STY:T033

LinkML Source

Direct

name: disease or phenotypic feature
description: Either one of a disease or an individual phenotypic feature. Some knowledge
  resources such as Monarch treat these as distinct, others such as MESH conflate.  Please
  see definitions of phenotypic feature and disease in this model for their independent
  descriptions.  This class is helpful to enforce domains and ranges   that may involve
  either a disease or a phenotypic feature.
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- phenome
narrow_mappings:
- STY:T033
is_a: biological entity
union_of:
- disease
- phenotypic feature