Skip to content

Class: DiseaseOrPhenotypicFeatureToLocationAssociation

An association between either a disease or a phenotypic feature and an anatomical entity, where the disease/feature manifests in that site.

URI: biolink:DiseaseOrPhenotypicFeatureToLocationAssociation

classDiagram class DiseaseOrPhenotypicFeatureToLocationAssociation DiseaseOrPhenotypicFeatureToEntityAssociationMixin <|-- DiseaseOrPhenotypicFeatureToLocationAssociation Association <|-- DiseaseOrPhenotypicFeatureToLocationAssociation DiseaseOrPhenotypicFeatureToLocationAssociation : aggregator_knowledge_source DiseaseOrPhenotypicFeatureToLocationAssociation : category DiseaseOrPhenotypicFeatureToLocationAssociation : description DiseaseOrPhenotypicFeatureToLocationAssociation : has_attribute DiseaseOrPhenotypicFeatureToLocationAssociation --|> attribute : has_attribute DiseaseOrPhenotypicFeatureToLocationAssociation : has_evidence DiseaseOrPhenotypicFeatureToLocationAssociation --|> evidence type : has_evidence DiseaseOrPhenotypicFeatureToLocationAssociation : id DiseaseOrPhenotypicFeatureToLocationAssociation : iri DiseaseOrPhenotypicFeatureToLocationAssociation : knowledge_source DiseaseOrPhenotypicFeatureToLocationAssociation : name DiseaseOrPhenotypicFeatureToLocationAssociation : negated DiseaseOrPhenotypicFeatureToLocationAssociation : object DiseaseOrPhenotypicFeatureToLocationAssociation --|> anatomical entity : object DiseaseOrPhenotypicFeatureToLocationAssociation : object_category DiseaseOrPhenotypicFeatureToLocationAssociation --|> ontology class : object_category DiseaseOrPhenotypicFeatureToLocationAssociation : object_category_closure DiseaseOrPhenotypicFeatureToLocationAssociation --|> ontology class : object_category_closure DiseaseOrPhenotypicFeatureToLocationAssociation : object_closure DiseaseOrPhenotypicFeatureToLocationAssociation : object_label_closure DiseaseOrPhenotypicFeatureToLocationAssociation : object_namespace DiseaseOrPhenotypicFeatureToLocationAssociation : original_object DiseaseOrPhenotypicFeatureToLocationAssociation : original_predicate DiseaseOrPhenotypicFeatureToLocationAssociation : original_subject DiseaseOrPhenotypicFeatureToLocationAssociation : predicate DiseaseOrPhenotypicFeatureToLocationAssociation : primary_knowledge_source DiseaseOrPhenotypicFeatureToLocationAssociation : publications DiseaseOrPhenotypicFeatureToLocationAssociation --|> publication : publications DiseaseOrPhenotypicFeatureToLocationAssociation : qualifiers DiseaseOrPhenotypicFeatureToLocationAssociation --|> ontology class : qualifiers DiseaseOrPhenotypicFeatureToLocationAssociation : retrieval_source_ids DiseaseOrPhenotypicFeatureToLocationAssociation --|> retrieval source : retrieval_source_ids DiseaseOrPhenotypicFeatureToLocationAssociation : subject DiseaseOrPhenotypicFeatureToLocationAssociation --|> disease or phenotypic feature : subject DiseaseOrPhenotypicFeatureToLocationAssociation : subject_category DiseaseOrPhenotypicFeatureToLocationAssociation --|> ontology class : subject_category DiseaseOrPhenotypicFeatureToLocationAssociation : subject_category_closure DiseaseOrPhenotypicFeatureToLocationAssociation --|> ontology class : subject_category_closure DiseaseOrPhenotypicFeatureToLocationAssociation : subject_closure DiseaseOrPhenotypicFeatureToLocationAssociation : subject_label_closure DiseaseOrPhenotypicFeatureToLocationAssociation : subject_namespace DiseaseOrPhenotypicFeatureToLocationAssociation : timepoint DiseaseOrPhenotypicFeatureToLocationAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
DiseaseOrPhenotypicFeature		 disease or phenotype Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
AnatomicalEntity		 anatomical entity in which the disease or feature is found Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:DiseaseOrPhenotypicFeatureToLocationAssociation
native biolink:DiseaseOrPhenotypicFeatureToLocationAssociation

LinkML Source

Direct

name: disease or phenotypic feature to location association
description: An association between either a disease or a phenotypic feature and an
  anatomical entity, where the disease/feature manifests in that site.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- disease or phenotypic feature to entity association mixin
slot_usage:
  object:
    name: object
    description: anatomical entity in which the disease or feature is found.
    examples:
    - value: UBERON:0002048
      description: lung
    domain_of:
    - association
    range: anatomical entity