Class: DiseaseToPhenotypicFeatureAssociation
An association between a disease and a phenotypic feature in which the phenotypic feature is associated with the disease in some way.
URI: biolink:DiseaseToPhenotypicFeatureAssociation
classDiagram
class DiseaseToPhenotypicFeatureAssociation
EntityToPhenotypicFeatureAssociationMixin <|-- DiseaseToPhenotypicFeatureAssociation
DiseaseToEntityAssociationMixin <|-- DiseaseToPhenotypicFeatureAssociation
Association <|-- DiseaseToPhenotypicFeatureAssociation
DiseaseToPhenotypicFeatureAssociation : aggregator_knowledge_source
DiseaseToPhenotypicFeatureAssociation : category
DiseaseToPhenotypicFeatureAssociation : description
DiseaseToPhenotypicFeatureAssociation : frequency_qualifier
DiseaseToPhenotypicFeatureAssociation : has_attribute
DiseaseToPhenotypicFeatureAssociation --|> attribute : has_attribute
DiseaseToPhenotypicFeatureAssociation : has_count
DiseaseToPhenotypicFeatureAssociation : has_evidence
DiseaseToPhenotypicFeatureAssociation --|> evidence type : has_evidence
DiseaseToPhenotypicFeatureAssociation : has_percentage
DiseaseToPhenotypicFeatureAssociation : has_quotient
DiseaseToPhenotypicFeatureAssociation : has_total
DiseaseToPhenotypicFeatureAssociation : id
DiseaseToPhenotypicFeatureAssociation : iri
DiseaseToPhenotypicFeatureAssociation : knowledge_source
DiseaseToPhenotypicFeatureAssociation : name
DiseaseToPhenotypicFeatureAssociation : negated
DiseaseToPhenotypicFeatureAssociation : object
DiseaseToPhenotypicFeatureAssociation --|> phenotypic feature : object
DiseaseToPhenotypicFeatureAssociation : object_category
DiseaseToPhenotypicFeatureAssociation --|> ontology class : object_category
DiseaseToPhenotypicFeatureAssociation : object_category_closure
DiseaseToPhenotypicFeatureAssociation --|> ontology class : object_category_closure
DiseaseToPhenotypicFeatureAssociation : object_closure
DiseaseToPhenotypicFeatureAssociation : object_label_closure
DiseaseToPhenotypicFeatureAssociation : object_namespace
DiseaseToPhenotypicFeatureAssociation : onset_qualifier
DiseaseToPhenotypicFeatureAssociation --|> onset : onset_qualifier
DiseaseToPhenotypicFeatureAssociation : original_object
DiseaseToPhenotypicFeatureAssociation : original_predicate
DiseaseToPhenotypicFeatureAssociation : original_subject
DiseaseToPhenotypicFeatureAssociation : predicate
DiseaseToPhenotypicFeatureAssociation : primary_knowledge_source
DiseaseToPhenotypicFeatureAssociation : publications
DiseaseToPhenotypicFeatureAssociation --|> publication : publications
DiseaseToPhenotypicFeatureAssociation : qualifiers
DiseaseToPhenotypicFeatureAssociation --|> ontology class : qualifiers
DiseaseToPhenotypicFeatureAssociation : retrieval_source_ids
DiseaseToPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids
DiseaseToPhenotypicFeatureAssociation : severity_qualifier
DiseaseToPhenotypicFeatureAssociation --|> severity value : severity_qualifier
DiseaseToPhenotypicFeatureAssociation : sex_qualifier
DiseaseToPhenotypicFeatureAssociation --|> biological sex : sex_qualifier
DiseaseToPhenotypicFeatureAssociation : subject
DiseaseToPhenotypicFeatureAssociation --|> disease : subject
DiseaseToPhenotypicFeatureAssociation : subject_category
DiseaseToPhenotypicFeatureAssociation --|> ontology class : subject_category
DiseaseToPhenotypicFeatureAssociation : subject_category_closure
DiseaseToPhenotypicFeatureAssociation --|> ontology class : subject_category_closure
DiseaseToPhenotypicFeatureAssociation : subject_closure
DiseaseToPhenotypicFeatureAssociation : subject_label_closure
DiseaseToPhenotypicFeatureAssociation : subject_namespace
DiseaseToPhenotypicFeatureAssociation : timepoint
DiseaseToPhenotypicFeatureAssociation : type
Inheritance
- Entity
- Association
- DiseaseToPhenotypicFeatureAssociation [ EntityToPhenotypicFeatureAssociationMixin DiseaseToEntityAssociationMixin]
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
sex_qualifier | 0..1 BiologicalSex |
a qualifier used in a phenotypic association to state whether the association... | EntityToPhenotypicFeatureAssociationMixin |
subject | 1..1 Disease |
disease class | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 PhenotypicFeature |
connects an association to the object of the association | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
has_count | 0..1 Integer |
number of things with a particular property | FrequencyQuantifier |
has_total | 0..1 Integer |
total number of things in a particular reference set | FrequencyQuantifier |
has_quotient | 0..1 Double |
FrequencyQuantifier | |
has_percentage | 0..1 Double |
equivalent to has quotient multiplied by 100 | FrequencyQuantifier |
severity_qualifier | 0..1 SeverityValue |
a qualifier used in a phenotypic association to state how severe the phenotyp... | EntityToFeatureOrDiseaseQualifiersMixin |
onset_qualifier | 0..1 Onset |
a qualifier used in a phenotypic association to state when the phenotype appe... | EntityToFeatureOrDiseaseQualifiersMixin |
frequency_qualifier | 0..1 FrequencyValue |
a qualifier used in a phenotypic association to state how frequent the phenot... | FrequencyQualifierMixin |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:DiseaseToPhenotypicFeatureAssociation |
native | biolink:DiseaseToPhenotypicFeatureAssociation |
close | dcid:DiseaseSymptomAssociation |
LinkML Source
Direct
name: disease to phenotypic feature association
description: An association between a disease and a phenotypic feature in which the
phenotypic feature is associated with the disease in some way.
from_schema: https://w3id.org/biolink/biolink-model
close_mappings:
- dcid:DiseaseSymptomAssociation
is_a: association
mixins:
- entity to phenotypic feature association mixin
- disease to entity association mixin
slot_usage:
subject:
name: subject
domain_of:
- association
range: disease
object:
name: object
domain_of:
- association
range: phenotypic feature
defining_slots:
- subject
- object