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Class: DiseaseToPhenotypicFeatureAssociation

An association between a disease and a phenotypic feature in which the phenotypic feature is associated with the disease in some way.

URI: biolink:DiseaseToPhenotypicFeatureAssociation

classDiagram class DiseaseToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- DiseaseToPhenotypicFeatureAssociation DiseaseToEntityAssociationMixin <|-- DiseaseToPhenotypicFeatureAssociation Association <|-- DiseaseToPhenotypicFeatureAssociation DiseaseToPhenotypicFeatureAssociation : aggregator_knowledge_source DiseaseToPhenotypicFeatureAssociation : category DiseaseToPhenotypicFeatureAssociation : description DiseaseToPhenotypicFeatureAssociation : frequency_qualifier DiseaseToPhenotypicFeatureAssociation : has_attribute DiseaseToPhenotypicFeatureAssociation --|> attribute : has_attribute DiseaseToPhenotypicFeatureAssociation : has_count DiseaseToPhenotypicFeatureAssociation : has_evidence DiseaseToPhenotypicFeatureAssociation --|> evidence type : has_evidence DiseaseToPhenotypicFeatureAssociation : has_percentage DiseaseToPhenotypicFeatureAssociation : has_quotient DiseaseToPhenotypicFeatureAssociation : has_total DiseaseToPhenotypicFeatureAssociation : id DiseaseToPhenotypicFeatureAssociation : iri DiseaseToPhenotypicFeatureAssociation : knowledge_source DiseaseToPhenotypicFeatureAssociation : name DiseaseToPhenotypicFeatureAssociation : negated DiseaseToPhenotypicFeatureAssociation : object DiseaseToPhenotypicFeatureAssociation --|> phenotypic feature : object DiseaseToPhenotypicFeatureAssociation : object_category DiseaseToPhenotypicFeatureAssociation --|> ontology class : object_category DiseaseToPhenotypicFeatureAssociation : object_category_closure DiseaseToPhenotypicFeatureAssociation --|> ontology class : object_category_closure DiseaseToPhenotypicFeatureAssociation : object_closure DiseaseToPhenotypicFeatureAssociation : object_label_closure DiseaseToPhenotypicFeatureAssociation : object_namespace DiseaseToPhenotypicFeatureAssociation : onset_qualifier DiseaseToPhenotypicFeatureAssociation --|> onset : onset_qualifier DiseaseToPhenotypicFeatureAssociation : original_object DiseaseToPhenotypicFeatureAssociation : original_predicate DiseaseToPhenotypicFeatureAssociation : original_subject DiseaseToPhenotypicFeatureAssociation : predicate DiseaseToPhenotypicFeatureAssociation : primary_knowledge_source DiseaseToPhenotypicFeatureAssociation : publications DiseaseToPhenotypicFeatureAssociation --|> publication : publications DiseaseToPhenotypicFeatureAssociation : qualifiers DiseaseToPhenotypicFeatureAssociation --|> ontology class : qualifiers DiseaseToPhenotypicFeatureAssociation : retrieval_source_ids DiseaseToPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids DiseaseToPhenotypicFeatureAssociation : severity_qualifier DiseaseToPhenotypicFeatureAssociation --|> severity value : severity_qualifier DiseaseToPhenotypicFeatureAssociation : sex_qualifier DiseaseToPhenotypicFeatureAssociation --|> biological sex : sex_qualifier DiseaseToPhenotypicFeatureAssociation : subject DiseaseToPhenotypicFeatureAssociation --|> disease : subject DiseaseToPhenotypicFeatureAssociation : subject_category DiseaseToPhenotypicFeatureAssociation --|> ontology class : subject_category DiseaseToPhenotypicFeatureAssociation : subject_category_closure DiseaseToPhenotypicFeatureAssociation --|> ontology class : subject_category_closure DiseaseToPhenotypicFeatureAssociation : subject_closure DiseaseToPhenotypicFeatureAssociation : subject_label_closure DiseaseToPhenotypicFeatureAssociation : subject_namespace DiseaseToPhenotypicFeatureAssociation : timepoint DiseaseToPhenotypicFeatureAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sex_qualifier 0..1
BiologicalSex
a qualifier used in a phenotypic association to state whether the association... EntityToPhenotypicFeatureAssociationMixin
subject 1..1
Disease
disease class Association
predicate 1..1
PredicateType
A high-level grouping for the relationship type Association
object 1..1
PhenotypicFeature
connects an association to the object of the association Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity
has_count 0..1
Integer
number of things with a particular property FrequencyQuantifier
has_total 0..1
Integer
total number of things in a particular reference set FrequencyQuantifier
has_quotient 0..1
Double
FrequencyQuantifier
has_percentage 0..1
Double
equivalent to has quotient multiplied by 100 FrequencyQuantifier
severity_qualifier 0..1
SeverityValue
a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset
a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue
a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:DiseaseToPhenotypicFeatureAssociation
native biolink:DiseaseToPhenotypicFeatureAssociation
close dcid:DiseaseSymptomAssociation

LinkML Source

Direct

name: disease to phenotypic feature association
description: An association between a disease and a phenotypic feature in which the
  phenotypic feature is associated with the disease in some way.
from_schema: https://w3id.org/biolink/biolink-model
close_mappings:
- dcid:DiseaseSymptomAssociation
is_a: association
mixins:
- entity to phenotypic feature association mixin
- disease to entity association mixin
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: disease
  object:
    name: object
    domain_of:
    - association
    range: phenotypic feature
defining_slots:
- subject
- object