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Class: DrugToGeneAssociation

An interaction between a drug and a gene or gene product.

URI: biolink:DrugToGeneAssociation

classDiagram class DrugToGeneAssociation DrugToEntityAssociationMixin <|-- DrugToGeneAssociation Association <|-- DrugToGeneAssociation DrugToGeneAssociation : aggregator_knowledge_source DrugToGeneAssociation : category DrugToGeneAssociation : description DrugToGeneAssociation : has_attribute DrugToGeneAssociation --|> attribute : has_attribute DrugToGeneAssociation : has_evidence DrugToGeneAssociation --|> evidence type : has_evidence DrugToGeneAssociation : id DrugToGeneAssociation : iri DrugToGeneAssociation : knowledge_source DrugToGeneAssociation : name DrugToGeneAssociation : negated DrugToGeneAssociation : object DrugToGeneAssociation --|> gene or gene product : object DrugToGeneAssociation : object_category DrugToGeneAssociation --|> ontology class : object_category DrugToGeneAssociation : object_category_closure DrugToGeneAssociation --|> ontology class : object_category_closure DrugToGeneAssociation : object_closure DrugToGeneAssociation : object_label_closure DrugToGeneAssociation : object_namespace DrugToGeneAssociation : original_object DrugToGeneAssociation : original_predicate DrugToGeneAssociation : original_subject DrugToGeneAssociation : predicate DrugToGeneAssociation : primary_knowledge_source DrugToGeneAssociation : publications DrugToGeneAssociation --|> publication : publications DrugToGeneAssociation : qualifiers DrugToGeneAssociation --|> ontology class : qualifiers DrugToGeneAssociation : retrieval_source_ids DrugToGeneAssociation --|> retrieval source : retrieval_source_ids DrugToGeneAssociation : subject DrugToGeneAssociation --|> drug : subject DrugToGeneAssociation : subject_category DrugToGeneAssociation --|> ontology class : subject_category DrugToGeneAssociation : subject_category_closure DrugToGeneAssociation --|> ontology class : subject_category_closure DrugToGeneAssociation : subject_closure DrugToGeneAssociation : subject_label_closure DrugToGeneAssociation : subject_namespace DrugToGeneAssociation : timepoint DrugToGeneAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Drug		 the drug that is an interactor Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
GeneOrGeneProduct		 the gene or gene product that is affected by the drug Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:DrugToGeneAssociation
native biolink:DrugToGeneAssociation
related SIO:001257

LinkML Source

Direct

name: drug to gene association
description: An interaction between a drug and a gene or gene product.
from_schema: https://w3id.org/biolink/biolink-model
related_mappings:
- SIO:001257
is_a: association
mixins:
- drug to entity association mixin
slot_usage:
  object:
    name: object
    description: the gene or gene product that is affected by the drug
    domain_of:
    - association
    range: gene or gene product
defining_slots:
- subject
- object