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Class: EntityToPhenotypicFeatureAssociationMixin

URI: biolink:EntityToPhenotypicFeatureAssociationMixin

classDiagram class EntityToPhenotypicFeatureAssociationMixin FrequencyQuantifier <|-- EntityToPhenotypicFeatureAssociationMixin EntityToFeatureOrDiseaseQualifiersMixin <|-- EntityToPhenotypicFeatureAssociationMixin EntityToPhenotypicFeatureAssociationMixin <|-- GenotypeToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- ExposureEventToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- DiseaseToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- CaseToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- BehaviorToBehavioralFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- GeneToDiseaseOrPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- GeneToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin <|-- VariantToPhenotypicFeatureAssociation EntityToPhenotypicFeatureAssociationMixin : frequency_qualifier EntityToPhenotypicFeatureAssociationMixin : has_count EntityToPhenotypicFeatureAssociationMixin : has_percentage EntityToPhenotypicFeatureAssociationMixin : has_quotient EntityToPhenotypicFeatureAssociationMixin : has_total EntityToPhenotypicFeatureAssociationMixin : onset_qualifier EntityToPhenotypicFeatureAssociationMixin --|> onset : onset_qualifier EntityToPhenotypicFeatureAssociationMixin : severity_qualifier EntityToPhenotypicFeatureAssociationMixin --|> severity value : severity_qualifier EntityToPhenotypicFeatureAssociationMixin : sex_qualifier EntityToPhenotypicFeatureAssociationMixin --|> biological sex : sex_qualifier

Inheritance

Slots

Name Cardinality and Range Description Inheritance
sex_qualifier 0..1
BiologicalSex		 a qualifier used in a phenotypic association to state whether the association... direct
has_count 0..1
Integer		 number of things with a particular property FrequencyQuantifier
has_total 0..1
Integer		 total number of things in a particular reference set FrequencyQuantifier
has_quotient 0..1
Double		 FrequencyQuantifier
has_percentage 0..1
Double		 equivalent to has quotient multiplied by 100 FrequencyQuantifier
severity_qualifier 0..1
SeverityValue		 a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset		 a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue		 a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Mixin Usage

mixed into description
GenotypeToPhenotypicFeatureAssociation Any association between one genotype and a phenotypic feature, where having t...
ExposureEventToPhenotypicFeatureAssociation Any association between an environment and a phenotypic feature, where being ...
DiseaseToPhenotypicFeatureAssociation An association between a disease and a phenotypic feature in which the phenot...
CaseToPhenotypicFeatureAssociation An association between a case (e
BehaviorToBehavioralFeatureAssociation An association between an mixture behavior and a behavioral feature manifeste...
GeneToDiseaseOrPhenotypicFeatureAssociation
GeneToPhenotypicFeatureAssociation
VariantToPhenotypicFeatureAssociation

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:EntityToPhenotypicFeatureAssociationMixin
native biolink:EntityToPhenotypicFeatureAssociationMixin

LinkML Source

Direct

name: entity to phenotypic feature association mixin
from_schema: https://w3id.org/biolink/biolink-model
is_a: entity to feature or disease qualifiers mixin
mixin: true
mixins:
- frequency quantifier
slots:
- sex qualifier
slot_usage:
  object:
    name: object
    examples:
    - value: HP:0002487
      description: Hyperkinesis
    - value: WBPhenotype:0000180
      description: axon morphology variant
    - value: MP:0001569
      description: abnormal circulating bilirubin level
    values_from:
    - upheno
    - hp
    - mp
    - wbphenotype
    domain_of:
    - association
    range: phenotypic feature
defining_slots:
- object