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Class: ExonToTranscriptRelationship

A transcript is formed from multiple exons

URI: biolink:ExonToTranscriptRelationship

classDiagram class ExonToTranscriptRelationship SequenceFeatureRelationship <|-- ExonToTranscriptRelationship ExonToTranscriptRelationship : aggregator_knowledge_source ExonToTranscriptRelationship : category ExonToTranscriptRelationship : description ExonToTranscriptRelationship : has_attribute ExonToTranscriptRelationship --|> attribute : has_attribute ExonToTranscriptRelationship : has_evidence ExonToTranscriptRelationship --|> evidence type : has_evidence ExonToTranscriptRelationship : id ExonToTranscriptRelationship : iri ExonToTranscriptRelationship : knowledge_source ExonToTranscriptRelationship : name ExonToTranscriptRelationship : negated ExonToTranscriptRelationship : object ExonToTranscriptRelationship --|> transcript : object ExonToTranscriptRelationship : object_category ExonToTranscriptRelationship --|> ontology class : object_category ExonToTranscriptRelationship : object_category_closure ExonToTranscriptRelationship --|> ontology class : object_category_closure ExonToTranscriptRelationship : object_closure ExonToTranscriptRelationship : object_label_closure ExonToTranscriptRelationship : object_namespace ExonToTranscriptRelationship : original_object ExonToTranscriptRelationship : original_predicate ExonToTranscriptRelationship : original_subject ExonToTranscriptRelationship : predicate ExonToTranscriptRelationship : primary_knowledge_source ExonToTranscriptRelationship : publications ExonToTranscriptRelationship --|> publication : publications ExonToTranscriptRelationship : qualifiers ExonToTranscriptRelationship --|> ontology class : qualifiers ExonToTranscriptRelationship : retrieval_source_ids ExonToTranscriptRelationship --|> retrieval source : retrieval_source_ids ExonToTranscriptRelationship : subject ExonToTranscriptRelationship --|> exon : subject ExonToTranscriptRelationship : subject_category ExonToTranscriptRelationship --|> ontology class : subject_category ExonToTranscriptRelationship : subject_category_closure ExonToTranscriptRelationship --|> ontology class : subject_category_closure ExonToTranscriptRelationship : subject_closure ExonToTranscriptRelationship : subject_label_closure ExonToTranscriptRelationship : subject_namespace ExonToTranscriptRelationship : timepoint ExonToTranscriptRelationship : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Exon		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
Transcript		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:ExonToTranscriptRelationship
native biolink:ExonToTranscriptRelationship

LinkML Source

Direct

name: exon to transcript relationship
description: A transcript is formed from multiple exons
from_schema: https://w3id.org/biolink/biolink-model
is_a: sequence feature relationship
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: exon
  object:
    name: object
    domain_of:
    - association
    range: transcript
defining_slots:
- subject
- object