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Class: FunctionalAssociation

An association between a macromolecular machine mixin (gene, gene product or complex of gene products) and either a molecular activity, a biological process or a cellular location in which a function is executed.

URI: biolink:FunctionalAssociation

classDiagram class FunctionalAssociation Association <|-- FunctionalAssociation FunctionalAssociation <|-- MacromolecularMachineToMolecularActivityAssociation FunctionalAssociation <|-- MacromolecularMachineToBiologicalProcessAssociation FunctionalAssociation <|-- MacromolecularMachineToCellularComponentAssociation FunctionalAssociation <|-- GeneToGoTermAssociation FunctionalAssociation : aggregator_knowledge_source FunctionalAssociation : category FunctionalAssociation : description FunctionalAssociation : has_attribute FunctionalAssociation --|> attribute : has_attribute FunctionalAssociation : has_evidence FunctionalAssociation --|> evidence type : has_evidence FunctionalAssociation : id FunctionalAssociation : iri FunctionalAssociation : knowledge_source FunctionalAssociation : name FunctionalAssociation : negated FunctionalAssociation : object FunctionalAssociation --|> ontology class : object FunctionalAssociation : object_category FunctionalAssociation --|> ontology class : object_category FunctionalAssociation : object_category_closure FunctionalAssociation --|> ontology class : object_category_closure FunctionalAssociation : object_closure FunctionalAssociation : object_label_closure FunctionalAssociation : object_namespace FunctionalAssociation : original_object FunctionalAssociation : original_predicate FunctionalAssociation : original_subject FunctionalAssociation : predicate FunctionalAssociation : primary_knowledge_source FunctionalAssociation : publications FunctionalAssociation --|> publication : publications FunctionalAssociation : qualifiers FunctionalAssociation --|> ontology class : qualifiers FunctionalAssociation : retrieval_source_ids FunctionalAssociation --|> retrieval source : retrieval_source_ids FunctionalAssociation : subject FunctionalAssociation --|> macromolecular machine mixin : subject FunctionalAssociation : subject_category FunctionalAssociation --|> ontology class : subject_category FunctionalAssociation : subject_category_closure FunctionalAssociation --|> ontology class : subject_category_closure FunctionalAssociation : subject_closure FunctionalAssociation : subject_label_closure FunctionalAssociation : subject_namespace FunctionalAssociation : timepoint FunctionalAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MacromolecularMachineMixin		 gene, product or macromolecular complex that has the function associated with... Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
OntologyClass		 class describing the activity, process or localization of the gene product Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:FunctionalAssociation
native biolink:FunctionalAssociation

LinkML Source

Direct

name: functional association
description: An association between a macromolecular machine mixin (gene, gene product
  or complex of gene products) and either a molecular activity, a biological process
  or a cellular location in which a function is executed.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    description: gene, product or macromolecular complex that has the function associated
      with the GO term
    examples:
    - value: ZFIN:ZDB-GENE-050417-357
      description: twist1b
    domain_of:
    - association
    range: macromolecular machine mixin
  object:
    name: object
    description: class describing the activity, process or localization of the gene
      product
    examples:
    - value: GO:0016301
      description: kinase activity
    - value: GO:0045211
      description: postsynaptic membrane
    values_from:
    - go
    domain_of:
    - association
    range: ontology class