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Class: GeneAsAModelOfDiseaseAssociation

URI: biolink:GeneAsAModelOfDiseaseAssociation

classDiagram class GeneAsAModelOfDiseaseAssociation ModelToDiseaseAssociationMixin <|-- GeneAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- GeneAsAModelOfDiseaseAssociation GeneToDiseaseAssociation <|-- GeneAsAModelOfDiseaseAssociation GeneAsAModelOfDiseaseAssociation : aggregator_knowledge_source GeneAsAModelOfDiseaseAssociation : category GeneAsAModelOfDiseaseAssociation : description GeneAsAModelOfDiseaseAssociation : frequency_qualifier GeneAsAModelOfDiseaseAssociation : has_attribute GeneAsAModelOfDiseaseAssociation --|> attribute : has_attribute GeneAsAModelOfDiseaseAssociation : has_count GeneAsAModelOfDiseaseAssociation : has_evidence GeneAsAModelOfDiseaseAssociation --|> evidence type : has_evidence GeneAsAModelOfDiseaseAssociation : has_percentage GeneAsAModelOfDiseaseAssociation : has_quotient GeneAsAModelOfDiseaseAssociation : has_total GeneAsAModelOfDiseaseAssociation : id GeneAsAModelOfDiseaseAssociation : iri GeneAsAModelOfDiseaseAssociation : knowledge_source GeneAsAModelOfDiseaseAssociation : name GeneAsAModelOfDiseaseAssociation : negated GeneAsAModelOfDiseaseAssociation : object GeneAsAModelOfDiseaseAssociation --|> disease : object GeneAsAModelOfDiseaseAssociation : object_category GeneAsAModelOfDiseaseAssociation --|> ontology class : object_category GeneAsAModelOfDiseaseAssociation : object_category_closure GeneAsAModelOfDiseaseAssociation --|> ontology class : object_category_closure GeneAsAModelOfDiseaseAssociation : object_closure GeneAsAModelOfDiseaseAssociation : object_direction_qualifier GeneAsAModelOfDiseaseAssociation --|> DirectionQualifierEnum : object_direction_qualifier GeneAsAModelOfDiseaseAssociation : object_label_closure GeneAsAModelOfDiseaseAssociation : object_namespace GeneAsAModelOfDiseaseAssociation : onset_qualifier GeneAsAModelOfDiseaseAssociation --|> onset : onset_qualifier GeneAsAModelOfDiseaseAssociation : original_object GeneAsAModelOfDiseaseAssociation : original_predicate GeneAsAModelOfDiseaseAssociation : original_subject GeneAsAModelOfDiseaseAssociation : predicate GeneAsAModelOfDiseaseAssociation : primary_knowledge_source GeneAsAModelOfDiseaseAssociation : publications GeneAsAModelOfDiseaseAssociation --|> publication : publications GeneAsAModelOfDiseaseAssociation : qualifiers GeneAsAModelOfDiseaseAssociation --|> ontology class : qualifiers GeneAsAModelOfDiseaseAssociation : retrieval_source_ids GeneAsAModelOfDiseaseAssociation --|> retrieval source : retrieval_source_ids GeneAsAModelOfDiseaseAssociation : severity_qualifier GeneAsAModelOfDiseaseAssociation --|> severity value : severity_qualifier GeneAsAModelOfDiseaseAssociation : sex_qualifier GeneAsAModelOfDiseaseAssociation --|> biological sex : sex_qualifier GeneAsAModelOfDiseaseAssociation : subject GeneAsAModelOfDiseaseAssociation --|> gene or gene product : subject GeneAsAModelOfDiseaseAssociation : subject_aspect_qualifier GeneAsAModelOfDiseaseAssociation --|> GeneOrGeneProductOrChemicalEntityAspectEnum : subject_aspect_qualifier GeneAsAModelOfDiseaseAssociation : subject_category GeneAsAModelOfDiseaseAssociation --|> ontology class : subject_category GeneAsAModelOfDiseaseAssociation : subject_category_closure GeneAsAModelOfDiseaseAssociation --|> ontology class : subject_category_closure GeneAsAModelOfDiseaseAssociation : subject_closure GeneAsAModelOfDiseaseAssociation : subject_label_closure GeneAsAModelOfDiseaseAssociation : subject_namespace GeneAsAModelOfDiseaseAssociation : timepoint GeneAsAModelOfDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject_aspect_qualifier 0..1
GeneOrGeneProductOrChemicalEntityAspectEnum
GeneToDiseaseOrPhenotypicFeatureAssociation
object_direction_qualifier 0..1
DirectionQualifierEnum
GeneToDiseaseOrPhenotypicFeatureAssociation
sex_qualifier 0..1
BiologicalSex
a qualifier used in a phenotypic association to state whether the association... EntityToPhenotypicFeatureAssociationMixin
subject 1..1
GeneOrGeneProduct
A gene that has a role in modeling the disease Association
predicate 1..1
PredicateType
The relationship to the disease Association
object 1..1
Disease
disease Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity
has_count 0..1
Integer
number of things with a particular property FrequencyQuantifier
has_total 0..1
Integer
total number of things in a particular reference set FrequencyQuantifier
has_quotient 0..1
Double
FrequencyQuantifier
has_percentage 0..1
Double
equivalent to has quotient multiplied by 100 FrequencyQuantifier
severity_qualifier 0..1
SeverityValue
a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset
a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue
a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneAsAModelOfDiseaseAssociation
native biolink:GeneAsAModelOfDiseaseAssociation

LinkML Source

Direct

name: gene as a model of disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene to disease association
mixins:
- model to disease association mixin
- entity to disease association mixin
slot_usage:
  subject:
    name: subject
    description: A gene that has a role in modeling the disease. This may be a model
      organism ortholog of a known disease gene, or it may be a gene whose mutants
      recapitulate core features of the disease.
    domain_of:
    - association
    range: gene or gene product
defining_slots:
- subject
- predicate
- object