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Class: GeneExpressionMixin

Observed gene expression intensity, context (site, stage) and associated phenotypic status within which the expression occurs.

URI: biolink:GeneExpressionMixin

classDiagram class GeneExpressionMixin GeneExpressionMixin <|-- GeneToGeneCoexpressionAssociation GeneExpressionMixin <|-- VariantToGeneExpressionAssociation GeneExpressionMixin : expression_site GeneExpressionMixin --|> anatomical entity : expression_site GeneExpressionMixin : phenotypic_state GeneExpressionMixin --|> disease or phenotypic feature : phenotypic_state GeneExpressionMixin : quantifier_qualifier GeneExpressionMixin --|> ontology class : quantifier_qualifier GeneExpressionMixin : stage_qualifier GeneExpressionMixin --|> life stage : stage_qualifier

Slots

Name Cardinality and Range Description Inheritance
quantifier_qualifier 0..1
OntologyClass		 Optional quantitative value indicating degree of expression direct
expression_site 0..1
AnatomicalEntity		 location in which gene or protein expression takes place direct
stage_qualifier 0..1
LifeStage		 stage during which gene or protein expression of takes place direct
phenotypic_state 0..1
DiseaseOrPhenotypicFeature		 in experiments (e direct

Mixin Usage

mixed into description
GeneToGeneCoexpressionAssociation Indicates that two genes are co-expressed, generally under the same condition...
VariantToGeneExpressionAssociation An association between a variant and expression of a gene (i

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneExpressionMixin
native biolink:GeneExpressionMixin

LinkML Source

Direct

name: gene expression mixin
description: Observed gene expression intensity, context (site, stage) and associated
  phenotypic status within which the expression occurs.
from_schema: https://w3id.org/biolink/biolink-model
mixin: true
slots:
- quantifier qualifier
- expression site
- stage qualifier
- phenotypic state
slot_usage:
  quantifier qualifier:
    name: quantifier qualifier
    description: Optional quantitative value indicating degree of expression.
    domain_of:
    - gene expression mixin
    - gene to expression site association