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Class: GeneFamily

any grouping of multiple genes or gene products related by common descent

URI: biolink:GeneFamily

classDiagram class GeneFamily GeneGroupingMixin <|-- GeneFamily ChemicalEntityOrGeneOrGeneProduct <|-- GeneFamily BiologicalEntity <|-- GeneFamily GeneFamily : category GeneFamily : description GeneFamily : full_name GeneFamily : has_attribute GeneFamily --|> attribute : has_attribute GeneFamily : has_gene_or_gene_product GeneFamily --|> gene : has_gene_or_gene_product GeneFamily : id GeneFamily : in_taxon GeneFamily --|> organism taxon : in_taxon GeneFamily : in_taxon_label GeneFamily : iri GeneFamily : name GeneFamily : provided_by GeneFamily : synonym GeneFamily : type GeneFamily : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_gene_or_gene_product 0..*
Gene		 connects an entity with one or more gene or gene products GeneGroupingMixin
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
GeneToGeneFamilyAssociation object range GeneFamily

Aliases

  • orthogroup
  • protein family

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • PANTHER.FAMILY

  • HGNC.FAMILY

  • FB

  • interpro

  • CATH

  • CDD

  • HAMAP

  • PFAM

  • PIRSF

  • PRINTS

  • PRODOM

  • PROSITE

  • SMART

  • SUPFAM

  • TIGRFAM

  • CATH.SUPERFAMILY

  • RFAM

  • KEGG.ORTHOLOGY

  • EGGNOG

  • COG

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneFamily
native biolink:GeneFamily
exact NCIT:C26004, WIKIDATA:Q2278983
narrow SIO:001380, NCIT:C20130, WIKIDATA:Q417841

LinkML Source

Direct

name: gene family
id_prefixes:
- PANTHER.FAMILY
- HGNC.FAMILY
- FB
- interpro
- CATH
- CDD
- HAMAP
- PFAM
- PIRSF
- PRINTS
- PRODOM
- PROSITE
- SMART
- SUPFAM
- TIGRFAM
- CATH.SUPERFAMILY
- RFAM
- KEGG.ORTHOLOGY
- EGGNOG
- COG
description: any grouping of multiple genes or gene products related by common descent
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- orthogroup
- protein family
exact_mappings:
- NCIT:C26004
- WIKIDATA:Q2278983
narrow_mappings:
- SIO:001380
- NCIT:C20130
- WIKIDATA:Q417841
is_a: biological entity
mixins:
- gene grouping mixin
- chemical entity or gene or gene product