Class: GeneToGeneCoexpressionAssociation
Indicates that two genes are co-expressed, generally under the same conditions.
URI: biolink:GeneToGeneCoexpressionAssociation
classDiagram
class GeneToGeneCoexpressionAssociation
GeneExpressionMixin <|-- GeneToGeneCoexpressionAssociation
GeneToGeneAssociation <|-- GeneToGeneCoexpressionAssociation
GeneToGeneCoexpressionAssociation : aggregator_knowledge_source
GeneToGeneCoexpressionAssociation : category
GeneToGeneCoexpressionAssociation : description
GeneToGeneCoexpressionAssociation : expression_site
GeneToGeneCoexpressionAssociation --|> anatomical entity : expression_site
GeneToGeneCoexpressionAssociation : has_attribute
GeneToGeneCoexpressionAssociation --|> attribute : has_attribute
GeneToGeneCoexpressionAssociation : has_evidence
GeneToGeneCoexpressionAssociation --|> evidence type : has_evidence
GeneToGeneCoexpressionAssociation : id
GeneToGeneCoexpressionAssociation : iri
GeneToGeneCoexpressionAssociation : knowledge_source
GeneToGeneCoexpressionAssociation : name
GeneToGeneCoexpressionAssociation : negated
GeneToGeneCoexpressionAssociation : object
GeneToGeneCoexpressionAssociation --|> gene or gene product : object
GeneToGeneCoexpressionAssociation : object_category
GeneToGeneCoexpressionAssociation --|> ontology class : object_category
GeneToGeneCoexpressionAssociation : object_category_closure
GeneToGeneCoexpressionAssociation --|> ontology class : object_category_closure
GeneToGeneCoexpressionAssociation : object_closure
GeneToGeneCoexpressionAssociation : object_label_closure
GeneToGeneCoexpressionAssociation : object_namespace
GeneToGeneCoexpressionAssociation : original_object
GeneToGeneCoexpressionAssociation : original_predicate
GeneToGeneCoexpressionAssociation : original_subject
GeneToGeneCoexpressionAssociation : phenotypic_state
GeneToGeneCoexpressionAssociation --|> disease or phenotypic feature : phenotypic_state
GeneToGeneCoexpressionAssociation : predicate
GeneToGeneCoexpressionAssociation : primary_knowledge_source
GeneToGeneCoexpressionAssociation : publications
GeneToGeneCoexpressionAssociation --|> publication : publications
GeneToGeneCoexpressionAssociation : qualifiers
GeneToGeneCoexpressionAssociation --|> ontology class : qualifiers
GeneToGeneCoexpressionAssociation : quantifier_qualifier
GeneToGeneCoexpressionAssociation --|> ontology class : quantifier_qualifier
GeneToGeneCoexpressionAssociation : retrieval_source_ids
GeneToGeneCoexpressionAssociation --|> retrieval source : retrieval_source_ids
GeneToGeneCoexpressionAssociation : stage_qualifier
GeneToGeneCoexpressionAssociation --|> life stage : stage_qualifier
GeneToGeneCoexpressionAssociation : subject
GeneToGeneCoexpressionAssociation --|> gene or gene product : subject
GeneToGeneCoexpressionAssociation : subject_category
GeneToGeneCoexpressionAssociation --|> ontology class : subject_category
GeneToGeneCoexpressionAssociation : subject_category_closure
GeneToGeneCoexpressionAssociation --|> ontology class : subject_category_closure
GeneToGeneCoexpressionAssociation : subject_closure
GeneToGeneCoexpressionAssociation : subject_label_closure
GeneToGeneCoexpressionAssociation : subject_namespace
GeneToGeneCoexpressionAssociation : timepoint
GeneToGeneCoexpressionAssociation : type
Inheritance
- Entity
- Association
- GeneToGeneAssociation
- GeneToGeneCoexpressionAssociation [ GeneExpressionMixin]
- GeneToGeneAssociation
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
quantifier_qualifier | 0..1 OntologyClass |
Optional quantitative value indicating degree of expression | GeneExpressionMixin |
expression_site | 0..1 AnatomicalEntity |
location in which gene or protein expression takes place | GeneExpressionMixin |
stage_qualifier | 0..1 LifeStage |
stage during which gene or protein expression of takes place | GeneExpressionMixin |
phenotypic_state | 0..1 DiseaseOrPhenotypicFeature |
in experiments (e | GeneExpressionMixin |
subject | 1..1 GeneOrGeneProduct |
the subject gene in the association | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 GeneOrGeneProduct |
the object gene in the association | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:GeneToGeneCoexpressionAssociation |
native | biolink:GeneToGeneCoexpressionAssociation |
LinkML Source
Direct
name: gene to gene coexpression association
description: Indicates that two genes are co-expressed, generally under the same conditions.
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene to gene association
mixins:
- gene expression mixin
slot_usage:
predicate:
name: predicate
domain_of:
- predicate mapping
- association
subproperty_of: coexpressed with
symmetric: true
defining_slots:
- subject
- predicate
- object