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Class: GeneToGeneCoexpressionAssociation

Indicates that two genes are co-expressed, generally under the same conditions.

URI: biolink:GeneToGeneCoexpressionAssociation

classDiagram class GeneToGeneCoexpressionAssociation GeneExpressionMixin <|-- GeneToGeneCoexpressionAssociation GeneToGeneAssociation <|-- GeneToGeneCoexpressionAssociation GeneToGeneCoexpressionAssociation : aggregator_knowledge_source GeneToGeneCoexpressionAssociation : category GeneToGeneCoexpressionAssociation : description GeneToGeneCoexpressionAssociation : expression_site GeneToGeneCoexpressionAssociation --|> anatomical entity : expression_site GeneToGeneCoexpressionAssociation : has_attribute GeneToGeneCoexpressionAssociation --|> attribute : has_attribute GeneToGeneCoexpressionAssociation : has_evidence GeneToGeneCoexpressionAssociation --|> evidence type : has_evidence GeneToGeneCoexpressionAssociation : id GeneToGeneCoexpressionAssociation : iri GeneToGeneCoexpressionAssociation : knowledge_source GeneToGeneCoexpressionAssociation : name GeneToGeneCoexpressionAssociation : negated GeneToGeneCoexpressionAssociation : object GeneToGeneCoexpressionAssociation --|> gene or gene product : object GeneToGeneCoexpressionAssociation : object_category GeneToGeneCoexpressionAssociation --|> ontology class : object_category GeneToGeneCoexpressionAssociation : object_category_closure GeneToGeneCoexpressionAssociation --|> ontology class : object_category_closure GeneToGeneCoexpressionAssociation : object_closure GeneToGeneCoexpressionAssociation : object_label_closure GeneToGeneCoexpressionAssociation : object_namespace GeneToGeneCoexpressionAssociation : original_object GeneToGeneCoexpressionAssociation : original_predicate GeneToGeneCoexpressionAssociation : original_subject GeneToGeneCoexpressionAssociation : phenotypic_state GeneToGeneCoexpressionAssociation --|> disease or phenotypic feature : phenotypic_state GeneToGeneCoexpressionAssociation : predicate GeneToGeneCoexpressionAssociation : primary_knowledge_source GeneToGeneCoexpressionAssociation : publications GeneToGeneCoexpressionAssociation --|> publication : publications GeneToGeneCoexpressionAssociation : qualifiers GeneToGeneCoexpressionAssociation --|> ontology class : qualifiers GeneToGeneCoexpressionAssociation : quantifier_qualifier GeneToGeneCoexpressionAssociation --|> ontology class : quantifier_qualifier GeneToGeneCoexpressionAssociation : retrieval_source_ids GeneToGeneCoexpressionAssociation --|> retrieval source : retrieval_source_ids GeneToGeneCoexpressionAssociation : stage_qualifier GeneToGeneCoexpressionAssociation --|> life stage : stage_qualifier GeneToGeneCoexpressionAssociation : subject GeneToGeneCoexpressionAssociation --|> gene or gene product : subject GeneToGeneCoexpressionAssociation : subject_category GeneToGeneCoexpressionAssociation --|> ontology class : subject_category GeneToGeneCoexpressionAssociation : subject_category_closure GeneToGeneCoexpressionAssociation --|> ontology class : subject_category_closure GeneToGeneCoexpressionAssociation : subject_closure GeneToGeneCoexpressionAssociation : subject_label_closure GeneToGeneCoexpressionAssociation : subject_namespace GeneToGeneCoexpressionAssociation : timepoint GeneToGeneCoexpressionAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
quantifier_qualifier 0..1
OntologyClass
Optional quantitative value indicating degree of expression GeneExpressionMixin
expression_site 0..1
AnatomicalEntity
location in which gene or protein expression takes place GeneExpressionMixin
stage_qualifier 0..1
LifeStage
stage during which gene or protein expression of takes place GeneExpressionMixin
phenotypic_state 0..1
DiseaseOrPhenotypicFeature
in experiments (e GeneExpressionMixin
subject 1..1
GeneOrGeneProduct
the subject gene in the association Association
predicate 1..1
PredicateType
A high-level grouping for the relationship type Association
object 1..1
GeneOrGeneProduct
the object gene in the association Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneToGeneCoexpressionAssociation
native biolink:GeneToGeneCoexpressionAssociation

LinkML Source

Direct

name: gene to gene coexpression association
description: Indicates that two genes are co-expressed, generally under the same conditions.
from_schema: https://w3id.org/biolink/biolink-model
is_a: gene to gene association
mixins:
- gene expression mixin
slot_usage:
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: coexpressed with
    symmetric: true
defining_slots:
- subject
- predicate
- object