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Class: GeneToGeneFamilyAssociation

Set membership of a gene in a family of genes related by common evolutionary ancestry usually inferred by sequence comparisons. The genes in a given family generally share common sequence motifs which generally map onto shared gene product structure-function relationships.

URI: biolink:GeneToGeneFamilyAssociation

classDiagram class GeneToGeneFamilyAssociation Association <|-- GeneToGeneFamilyAssociation GeneToGeneFamilyAssociation : aggregator_knowledge_source GeneToGeneFamilyAssociation : category GeneToGeneFamilyAssociation : description GeneToGeneFamilyAssociation : has_attribute GeneToGeneFamilyAssociation --|> attribute : has_attribute GeneToGeneFamilyAssociation : has_evidence GeneToGeneFamilyAssociation --|> evidence type : has_evidence GeneToGeneFamilyAssociation : id GeneToGeneFamilyAssociation : iri GeneToGeneFamilyAssociation : knowledge_source GeneToGeneFamilyAssociation : name GeneToGeneFamilyAssociation : negated GeneToGeneFamilyAssociation : object GeneToGeneFamilyAssociation --|> gene family : object GeneToGeneFamilyAssociation : object_category GeneToGeneFamilyAssociation --|> ontology class : object_category GeneToGeneFamilyAssociation : object_category_closure GeneToGeneFamilyAssociation --|> ontology class : object_category_closure GeneToGeneFamilyAssociation : object_closure GeneToGeneFamilyAssociation : object_label_closure GeneToGeneFamilyAssociation : object_namespace GeneToGeneFamilyAssociation : original_object GeneToGeneFamilyAssociation : original_predicate GeneToGeneFamilyAssociation : original_subject GeneToGeneFamilyAssociation : predicate GeneToGeneFamilyAssociation : primary_knowledge_source GeneToGeneFamilyAssociation : publications GeneToGeneFamilyAssociation --|> publication : publications GeneToGeneFamilyAssociation : qualifiers GeneToGeneFamilyAssociation --|> ontology class : qualifiers GeneToGeneFamilyAssociation : retrieval_source_ids GeneToGeneFamilyAssociation --|> retrieval source : retrieval_source_ids GeneToGeneFamilyAssociation : subject GeneToGeneFamilyAssociation --|> gene : subject GeneToGeneFamilyAssociation : subject_category GeneToGeneFamilyAssociation --|> ontology class : subject_category GeneToGeneFamilyAssociation : subject_category_closure GeneToGeneFamilyAssociation --|> ontology class : subject_category_closure GeneToGeneFamilyAssociation : subject_closure GeneToGeneFamilyAssociation : subject_label_closure GeneToGeneFamilyAssociation : subject_namespace GeneToGeneFamilyAssociation : timepoint GeneToGeneFamilyAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Gene		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 membership of the gene in the given gene family Association
object 1..1
GeneFamily		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneToGeneFamilyAssociation
native biolink:GeneToGeneFamilyAssociation

LinkML Source

Direct

name: gene to gene family association
description: Set membership of a gene in a family of genes related by common evolutionary
  ancestry usually inferred by sequence comparisons. The genes in a given family generally
  share common sequence motifs which generally map onto shared gene product structure-function
  relationships.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: gene
  object:
    name: object
    domain_of:
    - association
    range: gene family
  predicate:
    name: predicate
    description: membership of the gene in the given gene family.
    domain_of:
    - predicate mapping
    - association
    subproperty_of: member of
    symmetric: false
defining_slots:
- subject
- predicate
- object