Skip to content

Class: GeneToGeneProductRelationship

A gene is transcribed and potentially translated to a gene product

URI: biolink:GeneToGeneProductRelationship

classDiagram class GeneToGeneProductRelationship SequenceFeatureRelationship <|-- GeneToGeneProductRelationship GeneToGeneProductRelationship : aggregator_knowledge_source GeneToGeneProductRelationship : category GeneToGeneProductRelationship : description GeneToGeneProductRelationship : has_attribute GeneToGeneProductRelationship --|> attribute : has_attribute GeneToGeneProductRelationship : has_evidence GeneToGeneProductRelationship --|> evidence type : has_evidence GeneToGeneProductRelationship : id GeneToGeneProductRelationship : iri GeneToGeneProductRelationship : knowledge_source GeneToGeneProductRelationship : name GeneToGeneProductRelationship : negated GeneToGeneProductRelationship : object GeneToGeneProductRelationship --|> gene product mixin : object GeneToGeneProductRelationship : object_category GeneToGeneProductRelationship --|> ontology class : object_category GeneToGeneProductRelationship : object_category_closure GeneToGeneProductRelationship --|> ontology class : object_category_closure GeneToGeneProductRelationship : object_closure GeneToGeneProductRelationship : object_label_closure GeneToGeneProductRelationship : object_namespace GeneToGeneProductRelationship : original_object GeneToGeneProductRelationship : original_predicate GeneToGeneProductRelationship : original_subject GeneToGeneProductRelationship : predicate GeneToGeneProductRelationship : primary_knowledge_source GeneToGeneProductRelationship : publications GeneToGeneProductRelationship --|> publication : publications GeneToGeneProductRelationship : qualifiers GeneToGeneProductRelationship --|> ontology class : qualifiers GeneToGeneProductRelationship : retrieval_source_ids GeneToGeneProductRelationship --|> retrieval source : retrieval_source_ids GeneToGeneProductRelationship : subject GeneToGeneProductRelationship --|> gene : subject GeneToGeneProductRelationship : subject_category GeneToGeneProductRelationship --|> ontology class : subject_category GeneToGeneProductRelationship : subject_category_closure GeneToGeneProductRelationship --|> ontology class : subject_category_closure GeneToGeneProductRelationship : subject_closure GeneToGeneProductRelationship : subject_label_closure GeneToGeneProductRelationship : subject_namespace GeneToGeneProductRelationship : timepoint GeneToGeneProductRelationship : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Gene		 connects an association to the subject of the association Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
GeneProductMixin		 connects an association to the object of the association Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneToGeneProductRelationship
native biolink:GeneToGeneProductRelationship

LinkML Source

Direct

name: gene to gene product relationship
description: A gene is transcribed and potentially translated to a gene product
from_schema: https://w3id.org/biolink/biolink-model
is_a: sequence feature relationship
slot_usage:
  subject:
    name: subject
    domain_of:
    - association
    range: gene
  object:
    name: object
    domain_of:
    - association
    range: gene product mixin
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: has gene product
defining_slots:
- subject
- object