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Class: GeneToGoTermAssociation

URI: biolink:GeneToGoTermAssociation

classDiagram class GeneToGoTermAssociation FunctionalAssociation <|-- GeneToGoTermAssociation GeneToGoTermAssociation : aggregator_knowledge_source GeneToGoTermAssociation : category GeneToGoTermAssociation : description GeneToGoTermAssociation : has_attribute GeneToGoTermAssociation --|> attribute : has_attribute GeneToGoTermAssociation : has_evidence GeneToGoTermAssociation --|> evidence type : has_evidence GeneToGoTermAssociation : id GeneToGoTermAssociation : iri GeneToGoTermAssociation : knowledge_source GeneToGoTermAssociation : name GeneToGoTermAssociation : negated GeneToGoTermAssociation : object GeneToGoTermAssociation --|> ontology class : object GeneToGoTermAssociation : object_category GeneToGoTermAssociation --|> ontology class : object_category GeneToGoTermAssociation : object_category_closure GeneToGoTermAssociation --|> ontology class : object_category_closure GeneToGoTermAssociation : object_closure GeneToGoTermAssociation : object_label_closure GeneToGoTermAssociation : object_namespace GeneToGoTermAssociation : original_object GeneToGoTermAssociation : original_predicate GeneToGoTermAssociation : original_subject GeneToGoTermAssociation : predicate GeneToGoTermAssociation : primary_knowledge_source GeneToGoTermAssociation : publications GeneToGoTermAssociation --|> publication : publications GeneToGoTermAssociation : qualifiers GeneToGoTermAssociation --|> ontology class : qualifiers GeneToGoTermAssociation : retrieval_source_ids GeneToGoTermAssociation --|> retrieval source : retrieval_source_ids GeneToGoTermAssociation : subject GeneToGoTermAssociation --|> gene : subject GeneToGoTermAssociation : subject_category GeneToGoTermAssociation --|> ontology class : subject_category GeneToGoTermAssociation : subject_category_closure GeneToGoTermAssociation --|> ontology class : subject_category_closure GeneToGoTermAssociation : subject_closure GeneToGoTermAssociation : subject_label_closure GeneToGoTermAssociation : subject_namespace GeneToGoTermAssociation : timepoint GeneToGoTermAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Gene		 gene, product or macromolecular complex that has the function associated with... Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
OntologyClass		 class describing the activity, process or localization of the gene product Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Aliases

  • functional association

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GeneToGoTermAssociation
native biolink:GeneToGoTermAssociation
exact WBVocab:Gene-GO-Association

LinkML Source

Direct

name: gene to go term association
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- functional association
exact_mappings:
- WBVocab:Gene-GO-Association
is_a: functional association
slot_usage:
  subject:
    name: subject
    description: gene, product or macromolecular complex that has the function associated
      with the GO term
    examples:
    - value: ZFIN:ZDB-GENE-050417-357
      description: twist1b
    domain_of:
    - association
    range: gene
  object:
    name: object
    description: class describing the activity, process or localization of the gene
      product
    examples:
    - value: GO:0016301
      description: kinase activity
    values_from:
    - go
    domain_of:
    - association
    range: ontology class
defining_slots:
- subject
- object