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Class: GenomicBackgroundExposure

A genomic background exposure is where an individual's specific genomic background of genes, sequence variants or other pre-existing genomic conditions constitute a kind of 'exposure' to the organism, leading to or influencing an outcome.

URI: biolink:GenomicBackgroundExposure

classDiagram class GenomicBackgroundExposure ExposureEvent <|-- GenomicBackgroundExposure GeneGroupingMixin <|-- GenomicBackgroundExposure PhysicalEssence <|-- GenomicBackgroundExposure GenomicEntity <|-- GenomicBackgroundExposure ThingWithTaxon <|-- GenomicBackgroundExposure OntologyClass <|-- GenomicBackgroundExposure Attribute <|-- GenomicBackgroundExposure GenomicBackgroundExposure : category GenomicBackgroundExposure : description GenomicBackgroundExposure : full_name GenomicBackgroundExposure : has_attribute GenomicBackgroundExposure --|> attribute : has_attribute GenomicBackgroundExposure : has_attribute_type GenomicBackgroundExposure --|> ontology class : has_attribute_type GenomicBackgroundExposure : has_biological_sequence GenomicBackgroundExposure : has_gene_or_gene_product GenomicBackgroundExposure --|> gene : has_gene_or_gene_product GenomicBackgroundExposure : has_qualitative_value GenomicBackgroundExposure --|> named thing : has_qualitative_value GenomicBackgroundExposure : has_quantitative_value GenomicBackgroundExposure --|> quantity value : has_quantitative_value GenomicBackgroundExposure : id GenomicBackgroundExposure : in_taxon GenomicBackgroundExposure --|> organism taxon : in_taxon GenomicBackgroundExposure : in_taxon_label GenomicBackgroundExposure : iri GenomicBackgroundExposure : name GenomicBackgroundExposure : provided_by GenomicBackgroundExposure : synonym GenomicBackgroundExposure : timepoint GenomicBackgroundExposure : type GenomicBackgroundExposure : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
timepoint 0..1
TimeType		 a point in time ExposureEvent
has_gene_or_gene_product 0..*
Gene		 connects an entity with one or more gene or gene products GeneGroupingMixin
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
name 0..1
LabelType		 The human-readable 'attribute name' can be set to a string which reflects its... Attribute, Entity
has_attribute_type 1..1
OntologyClass		 connects an attribute to a class that describes it Attribute
has_quantitative_value 0..*
QuantityValue		 connects an attribute to a value Attribute
has_qualitative_value 0..1
NamedThing		 connects an attribute to a value Attribute
iri 0..1
IriType		 An IRI for an entity Attribute, Entity
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GenomicBackgroundExposure
native biolink:GenomicBackgroundExposure

LinkML Source

Direct

name: genomic background exposure
description: A genomic background exposure is where an individual's specific genomic
  background of genes, sequence variants or other pre-existing genomic conditions
  constitute a kind of 'exposure' to the organism, leading to or influencing an outcome.
from_schema: https://w3id.org/biolink/biolink-model
is_a: attribute
mixins:
- exposure event
- gene grouping mixin
- physical essence
- genomic entity
- thing with taxon
- ontology class