Class: GenomicEntity
URI: biolink:GenomicEntity
classDiagram
class GenomicEntity
GenomicEntity <|-- NucleicAcidEntity
GenomicEntity <|-- RegulatoryRegion
GenomicEntity <|-- AccessibleDnaRegion
GenomicEntity <|-- TranscriptionFactorBindingSite
GenomicEntity <|-- Gene
GenomicEntity <|-- NucleosomeModification
GenomicEntity <|-- Genome
GenomicEntity <|-- Genotype
GenomicEntity <|-- Haplotype
GenomicEntity <|-- SequenceVariant
GenomicEntity <|-- ReagentTargetedGene
GenomicEntity <|-- GenomicBackgroundExposure
GenomicEntity : has_biological_sequence
Slots
Mixin Usage
| mixed into |
description |
| NucleicAcidEntity |
A nucleic acid entity is a molecular entity characterized by availability in ... |
| RegulatoryRegion |
A region (or regions) of the genome that contains known or putative regulator... |
| AccessibleDnaRegion |
A region (or regions) of a chromatinized genome that has been measured to be ... |
| TranscriptionFactorBindingSite |
A region (or regions) of the genome that contains a region of DNA known or pr... |
| Gene |
A region (or regions) that includes all of the sequence elements necessary to... |
| NucleosomeModification |
A chemical modification of a histone protein within a nucleosome octomer or a... |
| Genome |
A genome is the sum of genetic material within a cell or virion |
| Genotype |
An information content entity that describes a genome by specifying the total... |
| Haplotype |
A set of zero or more Alleles on a single instance of a Sequence[VMC] |
| SequenceVariant |
A sequence_variant is a non exact copy of a sequence_feature or genome exhibi... |
| ReagentTargetedGene |
A gene altered in its expression level in the context of some experiment as a... |
| GenomicBackgroundExposure |
A genomic background exposure is where an individual's specific genomic backg... |
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
| Mapping Type |
Mapped Value |
| self |
biolink:GenomicEntity |
| native |
biolink:GenomicEntity |
| narrow |
STY:T028, GENO:0000897 |
LinkML Source
Direct
name: genomic entity
in_subset:
- translator_minimal
from_schema: https://w3id.org/biolink/biolink-model
narrow_mappings:
- STY:T028
- GENO:0000897
mixin: true
slots:
- has biological sequence