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Class: Genotype

An information content entity that describes a genome by specifying the total variation in genomic sequence and/or gene expression, relative to some established background

URI: biolink:Genotype

classDiagram class Genotype PhysicalEssence <|-- Genotype GenomicEntity <|-- Genotype OntologyClass <|-- Genotype BiologicalEntity <|-- Genotype Genotype : category Genotype : description Genotype : full_name Genotype : has_attribute Genotype --|> attribute : has_attribute Genotype : has_biological_sequence Genotype : has_zygosity Genotype --|> zygosity : has_zygosity Genotype : id Genotype : in_taxon Genotype --|> organism taxon : in_taxon Genotype : in_taxon_label Genotype : iri Genotype : name Genotype : provided_by Genotype : synonym Genotype : type Genotype : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_zygosity 0..1
Zygosity		 direct
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
GenotypeToGenotypePartAssociation subject range Genotype
GenotypeToGenotypePartAssociation object range Genotype
GenotypeToGeneAssociation subject range Genotype
GenotypeToVariantAssociation subject range Genotype
GenotypeToPhenotypicFeatureAssociation subject range Genotype
GenotypeToDiseaseAssociation subject range Genotype
GenotypeAsAModelOfDiseaseAssociation subject range Genotype

Comments

  • Consider renaming as genotypic entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • ZFIN

  • FB

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Genotype
native biolink:Genotype
exact GENO:0000536, SIO:001079

LinkML Source

Direct

name: genotype
id_prefixes:
- ZFIN
- FB
description: An information content entity that describes a genome by specifying the
  total variation in genomic sequence and/or gene expression, relative to some established
  background
comments:
- Consider renaming as genotypic entity
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- GENO:0000536
- SIO:001079
is_a: biological entity
mixins:
- physical essence
- genomic entity
- ontology class
slots:
- has zygosity