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Class: GenotypeAsAModelOfDiseaseAssociation

URI: biolink:GenotypeAsAModelOfDiseaseAssociation

classDiagram class GenotypeAsAModelOfDiseaseAssociation ModelToDiseaseAssociationMixin <|-- GenotypeAsAModelOfDiseaseAssociation EntityToDiseaseAssociationMixin <|-- GenotypeAsAModelOfDiseaseAssociation GenotypeToDiseaseAssociation <|-- GenotypeAsAModelOfDiseaseAssociation GenotypeAsAModelOfDiseaseAssociation : aggregator_knowledge_source GenotypeAsAModelOfDiseaseAssociation : category GenotypeAsAModelOfDiseaseAssociation : description GenotypeAsAModelOfDiseaseAssociation : frequency_qualifier GenotypeAsAModelOfDiseaseAssociation : has_attribute GenotypeAsAModelOfDiseaseAssociation --|> attribute : has_attribute GenotypeAsAModelOfDiseaseAssociation : has_evidence GenotypeAsAModelOfDiseaseAssociation --|> evidence type : has_evidence GenotypeAsAModelOfDiseaseAssociation : id GenotypeAsAModelOfDiseaseAssociation : iri GenotypeAsAModelOfDiseaseAssociation : knowledge_source GenotypeAsAModelOfDiseaseAssociation : name GenotypeAsAModelOfDiseaseAssociation : negated GenotypeAsAModelOfDiseaseAssociation : object GenotypeAsAModelOfDiseaseAssociation --|> disease : object GenotypeAsAModelOfDiseaseAssociation : object_category GenotypeAsAModelOfDiseaseAssociation --|> ontology class : object_category GenotypeAsAModelOfDiseaseAssociation : object_category_closure GenotypeAsAModelOfDiseaseAssociation --|> ontology class : object_category_closure GenotypeAsAModelOfDiseaseAssociation : object_closure GenotypeAsAModelOfDiseaseAssociation : object_label_closure GenotypeAsAModelOfDiseaseAssociation : object_namespace GenotypeAsAModelOfDiseaseAssociation : onset_qualifier GenotypeAsAModelOfDiseaseAssociation --|> onset : onset_qualifier GenotypeAsAModelOfDiseaseAssociation : original_object GenotypeAsAModelOfDiseaseAssociation : original_predicate GenotypeAsAModelOfDiseaseAssociation : original_subject GenotypeAsAModelOfDiseaseAssociation : predicate GenotypeAsAModelOfDiseaseAssociation : primary_knowledge_source GenotypeAsAModelOfDiseaseAssociation : publications GenotypeAsAModelOfDiseaseAssociation --|> publication : publications GenotypeAsAModelOfDiseaseAssociation : qualifiers GenotypeAsAModelOfDiseaseAssociation --|> ontology class : qualifiers GenotypeAsAModelOfDiseaseAssociation : retrieval_source_ids GenotypeAsAModelOfDiseaseAssociation --|> retrieval source : retrieval_source_ids GenotypeAsAModelOfDiseaseAssociation : severity_qualifier GenotypeAsAModelOfDiseaseAssociation --|> severity value : severity_qualifier GenotypeAsAModelOfDiseaseAssociation : subject GenotypeAsAModelOfDiseaseAssociation --|> genotype : subject GenotypeAsAModelOfDiseaseAssociation : subject_category GenotypeAsAModelOfDiseaseAssociation --|> ontology class : subject_category GenotypeAsAModelOfDiseaseAssociation : subject_category_closure GenotypeAsAModelOfDiseaseAssociation --|> ontology class : subject_category_closure GenotypeAsAModelOfDiseaseAssociation : subject_closure GenotypeAsAModelOfDiseaseAssociation : subject_label_closure GenotypeAsAModelOfDiseaseAssociation : subject_namespace GenotypeAsAModelOfDiseaseAssociation : timepoint GenotypeAsAModelOfDiseaseAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Genotype		 A genotype that has a role in modeling the disease Association
predicate 1..1
PredicateType		 The relationship to the disease Association
object 1..1
Disease		 disease Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity
severity_qualifier 0..1
SeverityValue		 a qualifier used in a phenotypic association to state how severe the phenotyp... EntityToFeatureOrDiseaseQualifiersMixin
onset_qualifier 0..1
Onset		 a qualifier used in a phenotypic association to state when the phenotype appe... EntityToFeatureOrDiseaseQualifiersMixin
frequency_qualifier 0..1
FrequencyValue		 a qualifier used in a phenotypic association to state how frequent the phenot... FrequencyQualifierMixin

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GenotypeAsAModelOfDiseaseAssociation
native biolink:GenotypeAsAModelOfDiseaseAssociation

LinkML Source

Direct

name: genotype as a model of disease association
from_schema: https://w3id.org/biolink/biolink-model
is_a: genotype to disease association
mixins:
- model to disease association mixin
- entity to disease association mixin
slot_usage:
  subject:
    name: subject
    description: A genotype that has a role in modeling the disease.
    domain_of:
    - association
    range: genotype
defining_slots:
- subject
- predicate
- object