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Class: GenotypeToGeneAssociation

Any association between a genotype and a gene. The genotype have have multiple variants in that gene or a single one. There is no assumption of cardinality

URI: biolink:GenotypeToGeneAssociation

classDiagram class GenotypeToGeneAssociation Association <|-- GenotypeToGeneAssociation GenotypeToGeneAssociation : aggregator_knowledge_source GenotypeToGeneAssociation : category GenotypeToGeneAssociation : description GenotypeToGeneAssociation : has_attribute GenotypeToGeneAssociation --|> attribute : has_attribute GenotypeToGeneAssociation : has_evidence GenotypeToGeneAssociation --|> evidence type : has_evidence GenotypeToGeneAssociation : id GenotypeToGeneAssociation : iri GenotypeToGeneAssociation : knowledge_source GenotypeToGeneAssociation : name GenotypeToGeneAssociation : negated GenotypeToGeneAssociation : object GenotypeToGeneAssociation --|> gene : object GenotypeToGeneAssociation : object_category GenotypeToGeneAssociation --|> ontology class : object_category GenotypeToGeneAssociation : object_category_closure GenotypeToGeneAssociation --|> ontology class : object_category_closure GenotypeToGeneAssociation : object_closure GenotypeToGeneAssociation : object_label_closure GenotypeToGeneAssociation : object_namespace GenotypeToGeneAssociation : original_object GenotypeToGeneAssociation : original_predicate GenotypeToGeneAssociation : original_subject GenotypeToGeneAssociation : predicate GenotypeToGeneAssociation : primary_knowledge_source GenotypeToGeneAssociation : publications GenotypeToGeneAssociation --|> publication : publications GenotypeToGeneAssociation : qualifiers GenotypeToGeneAssociation --|> ontology class : qualifiers GenotypeToGeneAssociation : retrieval_source_ids GenotypeToGeneAssociation --|> retrieval source : retrieval_source_ids GenotypeToGeneAssociation : subject GenotypeToGeneAssociation --|> genotype : subject GenotypeToGeneAssociation : subject_category GenotypeToGeneAssociation --|> ontology class : subject_category GenotypeToGeneAssociation : subject_category_closure GenotypeToGeneAssociation --|> ontology class : subject_category_closure GenotypeToGeneAssociation : subject_closure GenotypeToGeneAssociation : subject_label_closure GenotypeToGeneAssociation : subject_namespace GenotypeToGeneAssociation : timepoint GenotypeToGeneAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
Genotype		 parent genotype Association
predicate 1..1
PredicateType		 the relationship type used to connect genotype to gene Association
object 1..1
Gene		 gene implicated in genotype Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:GenotypeToGeneAssociation
native biolink:GenotypeToGeneAssociation

LinkML Source

Direct

name: genotype to gene association
description: Any association between a genotype and a gene. The genotype have have
  multiple variants in that gene or a single one. There is no assumption of cardinality
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  predicate:
    name: predicate
    description: the relationship type used to connect genotype to gene
    domain_of:
    - predicate mapping
    - association
  subject:
    name: subject
    description: parent genotype
    domain_of:
    - association
    range: genotype
  object:
    name: object
    description: gene implicated in genotype
    domain_of:
    - association
    range: gene
defining_slots:
- subject
- object