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Class: Haplotype

A set of zero or more Alleles on a single instance of a Sequence[VMC]

URI: biolink:Haplotype

classDiagram class Haplotype GenomicEntity <|-- Haplotype PhysicalEssence <|-- Haplotype OntologyClass <|-- Haplotype BiologicalEntity <|-- Haplotype Haplotype : category Haplotype : description Haplotype : full_name Haplotype : has_attribute Haplotype --|> attribute : has_attribute Haplotype : has_biological_sequence Haplotype : id Haplotype : in_taxon Haplotype --|> organism taxon : in_taxon Haplotype : in_taxon_label Haplotype : iri Haplotype : name Haplotype : provided_by Haplotype : synonym Haplotype : type Haplotype : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
has_biological_sequence 0..1
BiologicalSequence		 connects a genomic feature to its sequence GenomicEntity
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:Haplotype
native biolink:Haplotype
exact GENO:0000871, SO:0001024, VMC:Haplotype

LinkML Source

Direct

name: haplotype
description: A set of zero or more Alleles on a single instance of a Sequence[VMC]
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- GENO:0000871
- SO:0001024
- VMC:Haplotype
is_a: biological entity
mixins:
- genomic entity
- physical essence
- ontology class