Skip to content

Class: IndividualOrganism

An instance of an organism. For example, Richard Nixon, Charles Darwin, my pet cat. Example ID: ORCID:0000-0002-5355-2576

URI: biolink:IndividualOrganism

classDiagram class IndividualOrganism SubjectOfInvestigation <|-- IndividualOrganism OrganismalEntity <|-- IndividualOrganism IndividualOrganism <|-- Case IndividualOrganism : category IndividualOrganism : description IndividualOrganism : full_name IndividualOrganism : has_attribute IndividualOrganism --|> attribute : has_attribute IndividualOrganism : id IndividualOrganism : in_taxon IndividualOrganism --|> organism taxon : in_taxon IndividualOrganism : in_taxon_label IndividualOrganism : iri IndividualOrganism : name IndividualOrganism : provided_by IndividualOrganism : synonym IndividualOrganism : type IndividualOrganism : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 may often be an organism attribute Entity

Usages

used by used in type used
OrganismToOrganismAssociation subject range IndividualOrganism
OrganismToOrganismAssociation object range IndividualOrganism

Aliases

  • organism

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • ORCID

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:IndividualOrganism
native biolink:IndividualOrganism
exact SIO:010000, STY:T001
narrow WIKIDATA:Q795052, foaf:Person

LinkML Source

Direct

name: individual organism
id_prefixes:
- ORCID
description: 'An instance of an organism. For example, Richard Nixon, Charles Darwin,
  my pet cat. Example ID: ORCID:0000-0002-5355-2576'
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- organism
exact_mappings:
- SIO:010000
- STY:T001
narrow_mappings:
- WIKIDATA:Q795052
- foaf:Person
is_a: organismal entity
mixins:
- subject of investigation