Class: InformationContentEntityToNamedThingAssociation
association between a named thing and a information content entity where the specific context of the relationship between that named thing and the publication is unknown. For example, model organisms databases often capture the knowledge that a gene is found in a journal article, but not specifically the context in which that gene was documented in the article. In these cases, this association with the accompanying predicate 'mentions' could be used. Conversely, for more specific associations (like 'gene to disease association', the publication should be captured as an edge property).
URI: biolink:InformationContentEntityToNamedThingAssociation
classDiagram
class InformationContentEntityToNamedThingAssociation
Association <|-- InformationContentEntityToNamedThingAssociation
InformationContentEntityToNamedThingAssociation : aggregator_knowledge_source
InformationContentEntityToNamedThingAssociation : category
InformationContentEntityToNamedThingAssociation : description
InformationContentEntityToNamedThingAssociation : has_attribute
InformationContentEntityToNamedThingAssociation --|> attribute : has_attribute
InformationContentEntityToNamedThingAssociation : has_evidence
InformationContentEntityToNamedThingAssociation --|> evidence type : has_evidence
InformationContentEntityToNamedThingAssociation : id
InformationContentEntityToNamedThingAssociation : iri
InformationContentEntityToNamedThingAssociation : knowledge_source
InformationContentEntityToNamedThingAssociation : name
InformationContentEntityToNamedThingAssociation : negated
InformationContentEntityToNamedThingAssociation : object
InformationContentEntityToNamedThingAssociation --|> named thing : object
InformationContentEntityToNamedThingAssociation : object_category
InformationContentEntityToNamedThingAssociation --|> ontology class : object_category
InformationContentEntityToNamedThingAssociation : object_category_closure
InformationContentEntityToNamedThingAssociation --|> ontology class : object_category_closure
InformationContentEntityToNamedThingAssociation : object_closure
InformationContentEntityToNamedThingAssociation : object_label_closure
InformationContentEntityToNamedThingAssociation : object_namespace
InformationContentEntityToNamedThingAssociation : original_object
InformationContentEntityToNamedThingAssociation : original_predicate
InformationContentEntityToNamedThingAssociation : original_subject
InformationContentEntityToNamedThingAssociation : predicate
InformationContentEntityToNamedThingAssociation : primary_knowledge_source
InformationContentEntityToNamedThingAssociation : publications
InformationContentEntityToNamedThingAssociation --|> publication : publications
InformationContentEntityToNamedThingAssociation : qualifiers
InformationContentEntityToNamedThingAssociation --|> ontology class : qualifiers
InformationContentEntityToNamedThingAssociation : retrieval_source_ids
InformationContentEntityToNamedThingAssociation --|> retrieval source : retrieval_source_ids
InformationContentEntityToNamedThingAssociation : subject
InformationContentEntityToNamedThingAssociation --|> named thing : subject
InformationContentEntityToNamedThingAssociation : subject_category
InformationContentEntityToNamedThingAssociation --|> ontology class : subject_category
InformationContentEntityToNamedThingAssociation : subject_category_closure
InformationContentEntityToNamedThingAssociation --|> ontology class : subject_category_closure
InformationContentEntityToNamedThingAssociation : subject_closure
InformationContentEntityToNamedThingAssociation : subject_label_closure
InformationContentEntityToNamedThingAssociation : subject_namespace
InformationContentEntityToNamedThingAssociation : timepoint
InformationContentEntityToNamedThingAssociation : type
Inheritance
- Entity
- Association
- InformationContentEntityToNamedThingAssociation
- Association
Slots
Name | Cardinality and Range | Description | Inheritance |
---|---|---|---|
subject | 1..1 NamedThing |
connects an association to the subject of the association | Association |
predicate | 1..1 PredicateType |
A high-level grouping for the relationship type | Association |
object | 1..1 NamedThing |
connects an association to the object of the association | Association |
negated | 0..1 Boolean |
if set to true, then the association is negated i | Association |
qualifiers | 0..* OntologyClass |
connects an association to qualifiers that modify or qualify the meaning of t... | Association |
publications | 0..* Publication |
One or more publications that report the statement expressed in an Associati... | Association |
has_evidence | 0..* EvidenceType |
connects an association to an instance of supporting evidence | Association |
knowledge_source | 0..1 String |
An Information Resource from which the knowledge expressed in an Association ... | Association |
primary_knowledge_source | 0..1 String |
The most upstream source of the knowledge expressed in an Association that an... | Association |
aggregator_knowledge_source | 0..* String |
An intermediate aggregator resource from which knowledge expressed in an Asso... | Association |
timepoint | 0..1 TimeType |
a point in time | Association |
original_subject | 0..1 String |
used to hold the original subject of a relation (or predicate) that an extern... | Association |
original_predicate | 0..1 Uriorcurie |
used to hold the original relation/predicate that an external knowledge sourc... | Association |
original_object | 0..1 String |
used to hold the original object of a relation (or predicate) that an externa... | Association |
subject_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
object_category | 0..1 OntologyClass |
Used to hold the biolink class/category of an association | Association |
subject_closure | 0..* String |
Used to hold the subject closure of an association | Association |
object_closure | 0..* String |
Used to hold the object closure of an association | Association |
subject_category_closure | 0..* OntologyClass |
Used to hold the subject category closure of an association | Association |
object_category_closure | 0..* OntologyClass |
Used to hold the object category closure of an association | Association |
subject_namespace | 0..1 String |
Used to hold the subject namespace of an association | Association |
object_namespace | 0..1 String |
Used to hold the object namespace of an association | Association |
subject_label_closure | 0..* String |
Used to hold the subject label closure of an association | Association |
object_label_closure | 0..* String |
Used to hold the object label closure of an association | Association |
retrieval_source_ids | 0..* RetrievalSource |
A list of retrieval sources that served as a source of knowledge expressed in... | Association |
id | 1..1 String |
A unique identifier for an entity | Entity |
iri | 0..1 IriType |
An IRI for an entity | Entity |
category | 0..* CategoryType |
Name of the high level ontology class in which this entity is categorized | Entity |
type | 0..* String |
rdf:type of biolink:Association should be fixed at rdf:Statement | Entity |
name | 0..1 LabelType |
A human-readable name for an attribute or entity | Entity |
description | 0..1 NarrativeText |
a human-readable description of an entity | Entity |
has_attribute | 0..* Attribute |
connects any entity to an attribute | Entity |
Identifier and Mapping Information
Schema Source
- from schema: https://w3id.org/biolink/biolink-model
Mappings
Mapping Type | Mapped Value |
---|---|
self | biolink:InformationContentEntityToNamedThingAssociation |
native | biolink:InformationContentEntityToNamedThingAssociation |
LinkML Source
Direct
name: information content entity to named thing association
description: association between a named thing and a information content entity where
the specific context of the relationship between that named thing and the publication
is unknown. For example, model organisms databases often capture the knowledge that
a gene is found in a journal article, but not specifically the context in which
that gene was documented in the article. In these cases, this association with the
accompanying predicate 'mentions' could be used. Conversely, for more specific associations
(like 'gene to disease association', the publication should be captured as an edge
property).
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
subject:
name: subject
domain: publication
domain_of:
- association
object:
name: object
domain_of:
- association
range: named thing
predicate:
name: predicate
domain_of:
- predicate mapping
- association
subproperty_of: mentions
defining_slots:
- subject
- object