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Class: InformationContentEntityToNamedThingAssociation

association between a named thing and a information content entity where the specific context of the relationship between that named thing and the publication is unknown. For example, model organisms databases often capture the knowledge that a gene is found in a journal article, but not specifically the context in which that gene was documented in the article. In these cases, this association with the accompanying predicate 'mentions' could be used. Conversely, for more specific associations (like 'gene to disease association', the publication should be captured as an edge property).

URI: biolink:InformationContentEntityToNamedThingAssociation

classDiagram class InformationContentEntityToNamedThingAssociation Association <|-- InformationContentEntityToNamedThingAssociation InformationContentEntityToNamedThingAssociation : aggregator_knowledge_source InformationContentEntityToNamedThingAssociation : category InformationContentEntityToNamedThingAssociation : description InformationContentEntityToNamedThingAssociation : has_attribute InformationContentEntityToNamedThingAssociation --|> attribute : has_attribute InformationContentEntityToNamedThingAssociation : has_evidence InformationContentEntityToNamedThingAssociation --|> evidence type : has_evidence InformationContentEntityToNamedThingAssociation : id InformationContentEntityToNamedThingAssociation : iri InformationContentEntityToNamedThingAssociation : knowledge_source InformationContentEntityToNamedThingAssociation : name InformationContentEntityToNamedThingAssociation : negated InformationContentEntityToNamedThingAssociation : object InformationContentEntityToNamedThingAssociation --|> named thing : object InformationContentEntityToNamedThingAssociation : object_category InformationContentEntityToNamedThingAssociation --|> ontology class : object_category InformationContentEntityToNamedThingAssociation : object_category_closure InformationContentEntityToNamedThingAssociation --|> ontology class : object_category_closure InformationContentEntityToNamedThingAssociation : object_closure InformationContentEntityToNamedThingAssociation : object_label_closure InformationContentEntityToNamedThingAssociation : object_namespace InformationContentEntityToNamedThingAssociation : original_object InformationContentEntityToNamedThingAssociation : original_predicate InformationContentEntityToNamedThingAssociation : original_subject InformationContentEntityToNamedThingAssociation : predicate InformationContentEntityToNamedThingAssociation : primary_knowledge_source InformationContentEntityToNamedThingAssociation : publications InformationContentEntityToNamedThingAssociation --|> publication : publications InformationContentEntityToNamedThingAssociation : qualifiers InformationContentEntityToNamedThingAssociation --|> ontology class : qualifiers InformationContentEntityToNamedThingAssociation : retrieval_source_ids InformationContentEntityToNamedThingAssociation --|> retrieval source : retrieval_source_ids InformationContentEntityToNamedThingAssociation : subject InformationContentEntityToNamedThingAssociation --|> named thing : subject InformationContentEntityToNamedThingAssociation : subject_category InformationContentEntityToNamedThingAssociation --|> ontology class : subject_category InformationContentEntityToNamedThingAssociation : subject_category_closure InformationContentEntityToNamedThingAssociation --|> ontology class : subject_category_closure InformationContentEntityToNamedThingAssociation : subject_closure InformationContentEntityToNamedThingAssociation : subject_label_closure InformationContentEntityToNamedThingAssociation : subject_namespace InformationContentEntityToNamedThingAssociation : timepoint InformationContentEntityToNamedThingAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
NamedThing
connects an association to the subject of the association Association
predicate 1..1
PredicateType
A high-level grouping for the relationship type Association
object 1..1
NamedThing
connects an association to the object of the association Association
negated 0..1
Boolean
if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass
connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication
One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType
connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String
An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String
The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String
An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType
a point in time Association
original_subject 0..1
String
used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie
used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String
used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass
Used to hold the biolink class/category of an association Association
subject_closure 0..*
String
Used to hold the subject closure of an association Association
object_closure 0..*
String
Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass
Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass
Used to hold the object category closure of an association Association
subject_namespace 0..1
String
Used to hold the subject namespace of an association Association
object_namespace 0..1
String
Used to hold the object namespace of an association Association
subject_label_closure 0..*
String
Used to hold the subject label closure of an association Association
object_label_closure 0..*
String
Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource
A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String
A unique identifier for an entity Entity
iri 0..1
IriType
An IRI for an entity Entity
category 0..*
CategoryType
Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String
rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType
A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText
a human-readable description of an entity Entity
has_attribute 0..*
Attribute
connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:InformationContentEntityToNamedThingAssociation
native biolink:InformationContentEntityToNamedThingAssociation

LinkML Source

Direct

name: information content entity to named thing association
description: association between a named thing and a information content entity where
  the specific context of the relationship between that named thing and the publication
  is unknown. For example, model organisms databases often capture the knowledge that
  a gene is found in a journal article, but not specifically the context in which
  that gene was documented in the article. In these cases, this association with the
  accompanying predicate 'mentions' could be used. Conversely, for more specific associations
  (like 'gene to disease association', the publication should be captured as an edge
  property).
in_subset:
- model_organism_database
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    domain: publication
    domain_of:
    - association
  object:
    name: object
    domain_of:
    - association
    range: named thing
  predicate:
    name: predicate
    domain_of:
    - predicate mapping
    - association
    subproperty_of: mentions
defining_slots:
- subject
- object