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Class: JournalArticle

an article, typically presenting results of research, that is published in an issue of a scientific journal.

URI: biolink:JournalArticle

classDiagram class JournalArticle Article <|-- JournalArticle JournalArticle : authors JournalArticle --|> agent : authors JournalArticle : category JournalArticle : creation_date JournalArticle : description JournalArticle : format JournalArticle : full_name JournalArticle : has_attribute JournalArticle --|> attribute : has_attribute JournalArticle : id JournalArticle : iri JournalArticle : iso_abbreviation JournalArticle : issue JournalArticle : keywords JournalArticle : license JournalArticle : mesh_terms JournalArticle : name JournalArticle : pages JournalArticle : provided_by JournalArticle : published_in JournalArticle : rights JournalArticle : summary JournalArticle : synonym JournalArticle : type JournalArticle : volume JournalArticle : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
published_in 1..1
Uriorcurie		 The enclosing parent serial containing the article should have industry-stand... Article
iso_abbreviation 0..1
String		 Optional value, if used locally as a convenience, is set to the iso abbreviat... Article
volume 0..1
String		 volume of a book or music release in a collection/series or a published colle... Article
issue 0..1
String		 issue of a newspaper, a scientific journal or magazine for reference purpose Article
authors 0..*
Agent		 connects an publication to the list of authors who contributed to the publica... Publication
pages 0..*
String		 When a 2-tuple of page numbers are provided, they represent the start and end... Publication
summary 0..1
String		 executive summary of a publication Publication
keywords 0..*
String		 keywords tagging a publication Publication
mesh_terms 0..*
Uriorcurie		 mesh terms tagging a publication Publication
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... Publication, NamedThing
license 0..1
String		 InformationContentEntity
rights 0..1
String		 InformationContentEntity
format 0..1
String		 InformationContentEntity
creation_date 0..1
Date		 date on which an entity was created InformationContentEntity
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
id 1..1
String		 Different kinds of publication subtypes will have different preferred identif... Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 the 'title' of the publication is generally recorded in the 'name' property (... Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • PMID

  • PMCID

  • doi

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:JournalArticle
native biolink:JournalArticle
exact IAO:0000013, fabio:JournalArticle

LinkML Source

Direct

name: journal article
id_prefixes:
- PMID
- PMCID
- doi
description: an article, typically presenting results of research, that is published  in
  an issue of a scientific journal.
from_schema: https://w3id.org/biolink/biolink-model
exact_mappings:
- IAO:0000013
- fabio:JournalArticle
is_a: article