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Class: MacromolecularMachineToBiologicalProcessAssociation

A functional association between a macromolecular machine (gene, gene product or complex) and a biological process or pathway (as represented in the GO biological process branch), where the entity carries out some part of the process, regulates it, or acts upstream of it.

URI: biolink:MacromolecularMachineToBiologicalProcessAssociation

classDiagram class MacromolecularMachineToBiologicalProcessAssociation MacromolecularMachineToEntityAssociationMixin <|-- MacromolecularMachineToBiologicalProcessAssociation FunctionalAssociation <|-- MacromolecularMachineToBiologicalProcessAssociation MacromolecularMachineToBiologicalProcessAssociation : aggregator_knowledge_source MacromolecularMachineToBiologicalProcessAssociation : category MacromolecularMachineToBiologicalProcessAssociation : description MacromolecularMachineToBiologicalProcessAssociation : has_attribute MacromolecularMachineToBiologicalProcessAssociation --|> attribute : has_attribute MacromolecularMachineToBiologicalProcessAssociation : has_evidence MacromolecularMachineToBiologicalProcessAssociation --|> evidence type : has_evidence MacromolecularMachineToBiologicalProcessAssociation : id MacromolecularMachineToBiologicalProcessAssociation : iri MacromolecularMachineToBiologicalProcessAssociation : knowledge_source MacromolecularMachineToBiologicalProcessAssociation : name MacromolecularMachineToBiologicalProcessAssociation : negated MacromolecularMachineToBiologicalProcessAssociation : object MacromolecularMachineToBiologicalProcessAssociation --|> biological process : object MacromolecularMachineToBiologicalProcessAssociation : object_category MacromolecularMachineToBiologicalProcessAssociation --|> ontology class : object_category MacromolecularMachineToBiologicalProcessAssociation : object_category_closure MacromolecularMachineToBiologicalProcessAssociation --|> ontology class : object_category_closure MacromolecularMachineToBiologicalProcessAssociation : object_closure MacromolecularMachineToBiologicalProcessAssociation : object_label_closure MacromolecularMachineToBiologicalProcessAssociation : object_namespace MacromolecularMachineToBiologicalProcessAssociation : original_object MacromolecularMachineToBiologicalProcessAssociation : original_predicate MacromolecularMachineToBiologicalProcessAssociation : original_subject MacromolecularMachineToBiologicalProcessAssociation : predicate MacromolecularMachineToBiologicalProcessAssociation : primary_knowledge_source MacromolecularMachineToBiologicalProcessAssociation : publications MacromolecularMachineToBiologicalProcessAssociation --|> publication : publications MacromolecularMachineToBiologicalProcessAssociation : qualifiers MacromolecularMachineToBiologicalProcessAssociation --|> ontology class : qualifiers MacromolecularMachineToBiologicalProcessAssociation : retrieval_source_ids MacromolecularMachineToBiologicalProcessAssociation --|> retrieval source : retrieval_source_ids MacromolecularMachineToBiologicalProcessAssociation : subject MacromolecularMachineToBiologicalProcessAssociation --|> macromolecular machine mixin : subject MacromolecularMachineToBiologicalProcessAssociation : subject_category MacromolecularMachineToBiologicalProcessAssociation --|> ontology class : subject_category MacromolecularMachineToBiologicalProcessAssociation : subject_category_closure MacromolecularMachineToBiologicalProcessAssociation --|> ontology class : subject_category_closure MacromolecularMachineToBiologicalProcessAssociation : subject_closure MacromolecularMachineToBiologicalProcessAssociation : subject_label_closure MacromolecularMachineToBiologicalProcessAssociation : subject_namespace MacromolecularMachineToBiologicalProcessAssociation : timepoint MacromolecularMachineToBiologicalProcessAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MacromolecularMachineMixin		 gene, product or macromolecular complex that has the function associated with... Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
BiologicalProcess		 class describing the activity, process or localization of the gene product Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MacromolecularMachineToBiologicalProcessAssociation
native biolink:MacromolecularMachineToBiologicalProcessAssociation

LinkML Source

Direct

name: macromolecular machine to biological process association
description: A functional association between a macromolecular machine (gene, gene
  product or complex) and a biological process or pathway (as represented in the GO
  biological process branch), where the entity carries out some part of the process,
  regulates it, or acts upstream of it.
from_schema: https://w3id.org/biolink/biolink-model
is_a: functional association
mixins:
- macromolecular machine to entity association mixin
slot_usage:
  object:
    name: object
    domain_of:
    - association
    range: biological process