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Class: MacromolecularMachineToMolecularActivityAssociation

A functional association between a macromolecular machine (gene, gene product or complex) and a molecular activity (as represented in the GO molecular function branch), where the entity carries out the activity, or contributes to its execution.

URI: biolink:MacromolecularMachineToMolecularActivityAssociation

classDiagram class MacromolecularMachineToMolecularActivityAssociation MacromolecularMachineToEntityAssociationMixin <|-- MacromolecularMachineToMolecularActivityAssociation FunctionalAssociation <|-- MacromolecularMachineToMolecularActivityAssociation MacromolecularMachineToMolecularActivityAssociation : aggregator_knowledge_source MacromolecularMachineToMolecularActivityAssociation : category MacromolecularMachineToMolecularActivityAssociation : description MacromolecularMachineToMolecularActivityAssociation : has_attribute MacromolecularMachineToMolecularActivityAssociation --|> attribute : has_attribute MacromolecularMachineToMolecularActivityAssociation : has_evidence MacromolecularMachineToMolecularActivityAssociation --|> evidence type : has_evidence MacromolecularMachineToMolecularActivityAssociation : id MacromolecularMachineToMolecularActivityAssociation : iri MacromolecularMachineToMolecularActivityAssociation : knowledge_source MacromolecularMachineToMolecularActivityAssociation : name MacromolecularMachineToMolecularActivityAssociation : negated MacromolecularMachineToMolecularActivityAssociation : object MacromolecularMachineToMolecularActivityAssociation --|> molecular activity : object MacromolecularMachineToMolecularActivityAssociation : object_category MacromolecularMachineToMolecularActivityAssociation --|> ontology class : object_category MacromolecularMachineToMolecularActivityAssociation : object_category_closure MacromolecularMachineToMolecularActivityAssociation --|> ontology class : object_category_closure MacromolecularMachineToMolecularActivityAssociation : object_closure MacromolecularMachineToMolecularActivityAssociation : object_label_closure MacromolecularMachineToMolecularActivityAssociation : object_namespace MacromolecularMachineToMolecularActivityAssociation : original_object MacromolecularMachineToMolecularActivityAssociation : original_predicate MacromolecularMachineToMolecularActivityAssociation : original_subject MacromolecularMachineToMolecularActivityAssociation : predicate MacromolecularMachineToMolecularActivityAssociation : primary_knowledge_source MacromolecularMachineToMolecularActivityAssociation : publications MacromolecularMachineToMolecularActivityAssociation --|> publication : publications MacromolecularMachineToMolecularActivityAssociation : qualifiers MacromolecularMachineToMolecularActivityAssociation --|> ontology class : qualifiers MacromolecularMachineToMolecularActivityAssociation : retrieval_source_ids MacromolecularMachineToMolecularActivityAssociation --|> retrieval source : retrieval_source_ids MacromolecularMachineToMolecularActivityAssociation : subject MacromolecularMachineToMolecularActivityAssociation --|> macromolecular machine mixin : subject MacromolecularMachineToMolecularActivityAssociation : subject_category MacromolecularMachineToMolecularActivityAssociation --|> ontology class : subject_category MacromolecularMachineToMolecularActivityAssociation : subject_category_closure MacromolecularMachineToMolecularActivityAssociation --|> ontology class : subject_category_closure MacromolecularMachineToMolecularActivityAssociation : subject_closure MacromolecularMachineToMolecularActivityAssociation : subject_label_closure MacromolecularMachineToMolecularActivityAssociation : subject_namespace MacromolecularMachineToMolecularActivityAssociation : timepoint MacromolecularMachineToMolecularActivityAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MacromolecularMachineMixin		 gene, product or macromolecular complex that has the function associated with... Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
MolecularActivity		 class describing the activity, process or localization of the gene product Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MacromolecularMachineToMolecularActivityAssociation
native biolink:MacromolecularMachineToMolecularActivityAssociation

LinkML Source

Direct

name: macromolecular machine to molecular activity association
description: A functional association between a macromolecular machine (gene, gene
  product or complex) and a molecular activity (as represented in the GO molecular
  function branch), where the entity carries out the activity, or contributes to its
  execution.
from_schema: https://w3id.org/biolink/biolink-model
is_a: functional association
mixins:
- macromolecular machine to entity association mixin
slot_usage:
  object:
    name: object
    domain_of:
    - association
    range: molecular activity