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Class: MaterialSampleDerivationAssociation

An association between a material sample and the material entity from which it is derived.

URI: biolink:MaterialSampleDerivationAssociation

classDiagram class MaterialSampleDerivationAssociation Association <|-- MaterialSampleDerivationAssociation MaterialSampleDerivationAssociation : aggregator_knowledge_source MaterialSampleDerivationAssociation : category MaterialSampleDerivationAssociation : description MaterialSampleDerivationAssociation : has_attribute MaterialSampleDerivationAssociation --|> attribute : has_attribute MaterialSampleDerivationAssociation : has_evidence MaterialSampleDerivationAssociation --|> evidence type : has_evidence MaterialSampleDerivationAssociation : id MaterialSampleDerivationAssociation : iri MaterialSampleDerivationAssociation : knowledge_source MaterialSampleDerivationAssociation : name MaterialSampleDerivationAssociation : negated MaterialSampleDerivationAssociation : object MaterialSampleDerivationAssociation --|> named thing : object MaterialSampleDerivationAssociation : object_category MaterialSampleDerivationAssociation --|> ontology class : object_category MaterialSampleDerivationAssociation : object_category_closure MaterialSampleDerivationAssociation --|> ontology class : object_category_closure MaterialSampleDerivationAssociation : object_closure MaterialSampleDerivationAssociation : object_label_closure MaterialSampleDerivationAssociation : object_namespace MaterialSampleDerivationAssociation : original_object MaterialSampleDerivationAssociation : original_predicate MaterialSampleDerivationAssociation : original_subject MaterialSampleDerivationAssociation : predicate MaterialSampleDerivationAssociation : primary_knowledge_source MaterialSampleDerivationAssociation : publications MaterialSampleDerivationAssociation --|> publication : publications MaterialSampleDerivationAssociation : qualifiers MaterialSampleDerivationAssociation --|> ontology class : qualifiers MaterialSampleDerivationAssociation : retrieval_source_ids MaterialSampleDerivationAssociation --|> retrieval source : retrieval_source_ids MaterialSampleDerivationAssociation : subject MaterialSampleDerivationAssociation --|> material sample : subject MaterialSampleDerivationAssociation : subject_category MaterialSampleDerivationAssociation --|> ontology class : subject_category MaterialSampleDerivationAssociation : subject_category_closure MaterialSampleDerivationAssociation --|> ontology class : subject_category_closure MaterialSampleDerivationAssociation : subject_closure MaterialSampleDerivationAssociation : subject_label_closure MaterialSampleDerivationAssociation : subject_namespace MaterialSampleDerivationAssociation : timepoint MaterialSampleDerivationAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MaterialSample		 the material sample being described Association
predicate 1..1
PredicateType		 derivation relationship Association
object 1..1
NamedThing		 the material entity the sample was derived from Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MaterialSampleDerivationAssociation
native biolink:MaterialSampleDerivationAssociation

LinkML Source

Direct

name: material sample derivation association
description: An association between a material sample and the material entity from
  which it is derived.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
slot_usage:
  subject:
    name: subject
    description: the material sample being described
    domain_of:
    - association
    range: material sample
  object:
    name: object
    description: the material entity the sample was derived from. This may be another
      material sample, or any other material entity, including for example an organism,
      a geographic feature, or some environmental material.
    domain_of:
    - association
  predicate:
    name: predicate
    description: derivation relationship
    domain_of:
    - predicate mapping
    - association
    subproperty_of: derives from
defining_slots:
- subject
- predicate