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Class: MaterialSampleToDiseaseOrPhenotypicFeatureAssociation

An association between a material sample and a disease or phenotype.

URI: biolink:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation

classDiagram class MaterialSampleToDiseaseOrPhenotypicFeatureAssociation MaterialSampleToEntityAssociationMixin <|-- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation EntityToDiseaseOrPhenotypicFeatureAssociationMixin <|-- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation Association <|-- MaterialSampleToDiseaseOrPhenotypicFeatureAssociation MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : aggregator_knowledge_source MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : category MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : description MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : has_attribute MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> attribute : has_attribute MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : has_evidence MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> evidence type : has_evidence MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : id MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : iri MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : knowledge_source MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : name MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : negated MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> disease or phenotypic feature : object MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object_category MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object_category_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : object_category_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object_label_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : object_namespace MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : original_object MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : original_predicate MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : original_subject MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : predicate MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : primary_knowledge_source MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : publications MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> publication : publications MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : qualifiers MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : qualifiers MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : retrieval_source_ids MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> retrieval source : retrieval_source_ids MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> material sample : subject MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject_category MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject_category_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation --|> ontology class : subject_category_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject_label_closure MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : subject_namespace MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : timepoint MaterialSampleToDiseaseOrPhenotypicFeatureAssociation : type

Inheritance

Slots

Name Cardinality and Range Description Inheritance
subject 1..1
MaterialSample		 the material sample being described Association
predicate 1..1
PredicateType		 A high-level grouping for the relationship type Association
object 1..1
DiseaseOrPhenotypicFeature		 disease or phenotype Association
negated 0..1
Boolean		 if set to true, then the association is negated i Association
qualifiers 0..*
OntologyClass		 connects an association to qualifiers that modify or qualify the meaning of t... Association
publications 0..*
Publication		 One or more publications that report the statement expressed in an Associati... Association
has_evidence 0..*
EvidenceType		 connects an association to an instance of supporting evidence Association
knowledge_source 0..1
String		 An Information Resource from which the knowledge expressed in an Association ... Association
primary_knowledge_source 0..1
String		 The most upstream source of the knowledge expressed in an Association that an... Association
aggregator_knowledge_source 0..*
String		 An intermediate aggregator resource from which knowledge expressed in an Asso... Association
timepoint 0..1
TimeType		 a point in time Association
original_subject 0..1
String		 used to hold the original subject of a relation (or predicate) that an extern... Association
original_predicate 0..1
Uriorcurie		 used to hold the original relation/predicate that an external knowledge sourc... Association
original_object 0..1
String		 used to hold the original object of a relation (or predicate) that an externa... Association
subject_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
object_category 0..1
OntologyClass		 Used to hold the biolink class/category of an association Association
subject_closure 0..*
String		 Used to hold the subject closure of an association Association
object_closure 0..*
String		 Used to hold the object closure of an association Association
subject_category_closure 0..*
OntologyClass		 Used to hold the subject category closure of an association Association
object_category_closure 0..*
OntologyClass		 Used to hold the object category closure of an association Association
subject_namespace 0..1
String		 Used to hold the subject namespace of an association Association
object_namespace 0..1
String		 Used to hold the object namespace of an association Association
subject_label_closure 0..*
String		 Used to hold the subject label closure of an association Association
object_label_closure 0..*
String		 Used to hold the object label closure of an association Association
retrieval_source_ids 0..*
RetrievalSource		 A list of retrieval sources that served as a source of knowledge expressed in... Association
id 1..1
String		 A unique identifier for an entity Entity
iri 0..1
IriType		 An IRI for an entity Entity
category 0..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 rdf:type of biolink:Association should be fixed at rdf:Statement Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Identifier and Mapping Information

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation
native biolink:MaterialSampleToDiseaseOrPhenotypicFeatureAssociation

LinkML Source

Direct

name: material sample to disease or phenotypic feature association
description: An association between a material sample and a disease or phenotype.
from_schema: https://w3id.org/biolink/biolink-model
is_a: association
mixins:
- material sample to entity association mixin
- entity to disease or phenotypic feature association mixin
defining_slots:
- subject
- object