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Class: MolecularActivity

An execution of a molecular function carried out by a gene product or macromolecular complex.

URI: biolink:MolecularActivity

classDiagram class MolecularActivity Occurrent <|-- MolecularActivity OntologyClass <|-- MolecularActivity BiologicalProcessOrActivity <|-- MolecularActivity MolecularActivity : category MolecularActivity : description MolecularActivity : enabled_by MolecularActivity --|> macromolecular machine mixin : enabled_by MolecularActivity : full_name MolecularActivity : has_attribute MolecularActivity --|> attribute : has_attribute MolecularActivity : has_input MolecularActivity --|> molecular entity : has_input MolecularActivity : has_output MolecularActivity --|> molecular entity : has_output MolecularActivity : id MolecularActivity : in_taxon MolecularActivity --|> organism taxon : in_taxon MolecularActivity : in_taxon_label MolecularActivity : iri MolecularActivity : name MolecularActivity : provided_by MolecularActivity : synonym MolecularActivity : type MolecularActivity : xref

Inheritance

Slots

Name Cardinality and Range Description Inheritance
id 1..1
String		 A unique identifier for an entity Entity, OntologyClass
has_input 0..*
MolecularEntity		 A chemical entity that is the input for the reaction BiologicalProcessOrActivity
has_output 0..*
MolecularEntity		 A chemical entity that is the output for the reaction BiologicalProcessOrActivity
enabled_by 0..*
MacromolecularMachineMixin		 The gene product, gene, or complex that catalyzes the reaction BiologicalProcessOrActivity
in_taxon 0..*
OrganismTaxon		 connects an entity to its taxonomic classification ThingWithTaxon
in_taxon_label 0..1
LabelType		 The human readable scientific name for the taxon of the entity ThingWithTaxon
provided_by 0..*
String		 The value in this node property represents the knowledge provider that create... NamedThing
xref 0..*
Uriorcurie		 A database cross reference or alternative identifier for a NamedThing or edge... NamedThing
full_name 0..1
LabelType		 a long-form human readable name for a thing NamedThing
synonym 0..*
LabelType		 Alternate human-readable names for a thing NamedThing
iri 0..1
IriType		 An IRI for an entity Entity
category 1..*
CategoryType		 Name of the high level ontology class in which this entity is categorized Entity
type 0..*
String		 Entity
name 0..1
LabelType		 A human-readable name for an attribute or entity Entity
description 0..1
NarrativeText		 a human-readable description of an entity Entity
has_attribute 0..*
Attribute		 connects any entity to an attribute Entity

Usages

used by used in type used
MolecularActivityToPathwayAssociation subject range MolecularActivity
MacromolecularMachineToMolecularActivityAssociation object range MolecularActivity
MolecularActivityToChemicalEntityAssociation subject range MolecularActivity
MolecularActivityToMolecularActivityAssociation subject range MolecularActivity
MolecularActivityToMolecularActivityAssociation object range MolecularActivity

Aliases

  • molecular function
  • molecular event
  • reaction

Identifier and Mapping Information

Valid ID Prefixes

Instances of this class should have identifiers with one of the following prefixes:

  • GO

  • REACT

  • RHEA

  • metacyc.reaction

  • EC

  • TCDB

  • KEGG.REACTION

  • KEGG

  • KEGG.ORTHOLOGY

  • UMLS

  • BIGG.REACTION

  • SEED.REACTION

  • METANETX.REACTION

Schema Source

  • from schema: https://w3id.org/biolink/biolink-model

Mappings

Mapping Type Mapped Value
self biolink:MolecularActivity
native biolink:MolecularActivity
exact GO:0003674, STY:T044
broad STY:T045

LinkML Source

Direct

name: molecular activity
id_prefixes:
- GO
- REACT
- RHEA
- metacyc.reaction
- EC
- TCDB
- KEGG.REACTION
- KEGG
- KEGG.ORTHOLOGY
- UMLS
- BIGG.REACTION
- SEED.REACTION
- METANETX.REACTION
description: An execution of a molecular function carried out by a gene product or
  macromolecular complex.
from_schema: https://w3id.org/biolink/biolink-model
aliases:
- molecular function
- molecular event
- reaction
exact_mappings:
- GO:0003674
- STY:T044
broad_mappings:
- STY:T045
is_a: biological process or activity
mixins:
- occurrent
- ontology class
slot_usage:
  has input:
    name: has input
    description: A chemical entity that is the input for the reaction
    domain_of:
    - biological process or activity
    range: molecular entity
  has output:
    name: has output
    description: A chemical entity that is the output for the reaction
    domain_of:
    - biological process or activity
    range: molecular entity
  enabled by:
    name: enabled by
    description: The gene product, gene, or complex that catalyzes the reaction
    domain_of:
    - biological process or activity
    range: macromolecular machine mixin